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Microbial genetics

Genomic epidemiology and carbon metabolism of Escherichia coli serogroup O145 reflect contrasting phylogenies

Rose M. Collis, Patrick J. Biggs, Anne C. Midwinter, A. Springer Browne, David A. Wilkinson, Hamid Irshad, Nigel P. French, Gale Brightwell, Adrian L. Cookson

published 25 Jun 2020

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Effect of bovine leukemia virus (BLV) infection on bovine mammary epithelial cells RNA-seq transcriptome profile

Lucia Martinez Cuesta, Juan Pedro Liron, María Victoria Nieto Farias, Guillermina Laura Dolcini, Maria Carolina Ceriani

published 24 Jun 2020

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Signature genes associated with immunological non-responsiveness to anti-retroviral therapy in HIV-1 subtype-c infection

Sukhvinder Singh, Jaideep S. Toor, Aman Sharma, Sunil K. Arora

published 24 Jun 2020

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Distribution of class 1 integrons in historic and contemporary collections of human pathogenic Escherichia coli

Susanne Sütterlin, James E. Bray, Martin C. J. Maiden, Eva Tano

published 02 Jun 2020

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Whole genome sequences of multi-drug resistant Escherichia coli isolated in a Pastoralist Community of Western Uganda: Phylogenomic changes, virulence and resistant genes

Jacob Stanley Iramiot, Henry Kajumbula, Joel Bazira, Etienne P. de Villiers, Benon B. Asiimwe

published 29 May 2020

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Expression of hepatic stellate cell activation-related genes in HBV-, HCV-, and nonalcoholic fatty liver disease-associated fibrosis

Lu He, Hui Yuan, Junjie Liang, Jian Hong, Chen Qu

published 22 May 2020

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Whole genome sequence and comparative genome analyses of multi-resistant Staphylococcus warneri GD01 isolated from a diseased pig in China

Canying Liu, Xianjie Zhao, Honglin Xie, Xi Zhang, Kangjian Li, Chunquan Ma, Qiang Fu

published 22 May 2020

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MinION Sequencing of colorectal cancer tumour microbiomes—A comparison with amplicon-based and RNA-Sequencing

William S. Taylor, John Pearson, Allison Miller, Sebastian Schmeier, Frank A. Frizelle, Rachel V. Purcell

published 20 May 2020

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Isolation of a novel species in the genus Cupriavidus from a patient with sepsis using whole genome sequencing

Oh Joo Kweon, Yong Kwan Lim, Hye Ryoun Kim, Tae-Hyoung Kim, Sung-min Ha, Mi-Kyung Lee

published 13 May 2020

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Identification and characterization of a novel extracellular polyhydroxyalkanoate depolymerase in the complete genome sequence of Undibacterium sp. KW1 and YM2 strains

Tomohiro Morohoshi, Taishiro Oi, Tomohiro Suzuki, Shunsuke Sato

published 05 May 2020

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A qPCR assay for Bordetella pertussis cells that enumerates both live and dead bacteria

Stacy Ramkissoon, Iain MacArthur, Muktar Ibrahim, Hans de Graaf, Robert C. Read, Andrew Preston

published 30 Apr 2020

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Ectoine degradation pathway in halotolerant methylotrophs

Aleksander S. Reshetnikov, Olga N. Rozova, Yuri A. Trotsenko, Sergey Yu. But, Valentina N. Khmelenina, Ildar I. Mustakhimov

published 30 Apr 2020

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A transcriptional regulatory network of Rsv3-mediated extreme resistance against Soybean mosaic virus

Lindsay C. DeMers, Neelam R. Redekar, Aardra Kachroo, Sue A. Tolin, Song Li, M. A. Saghai Maroof

published 21 Apr 2020

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