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Microbial genetics

Whole genome genetic variation and linkage disequilibrium in a diverse collection of Listeria monocytogenes isolates

Swarnali Louha, Richard J. Meinersmann, Travis C. Glenn

published 25 Feb 2021

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Analysis of lung transcriptome in calves infected with Bovine Respiratory Syncytial Virus and treated with antiviral and/or cyclooxygenase inhibitor

Maxim Lebedev, Heather A. McEligot, Victoria N. Mutua, Paul Walsh, Francisco R. Carvallo Chaigneau, Laurel J. Gershwin

published 18 Feb 2021

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Genomic diversity and organization of complex polysaccharide biosynthesis clusters in the genus Dickeya

Manish Ranjan, Devanshi Khokhani, Sanjeeva Nayaka, Suchi Srivastava, Zachary P. Keyser, Ashish Ranjan

published 11 Feb 2021

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Recombinase polymerase amplification assay combined with a dipstick-readout for rapid detection of Mycoplasma ovipneumoniae infections

Sandeep K. Gupta, Qing Deng, Tanushree B. Gupta, Paul Maclean, Joerg Jores, Axel Heiser, D. Neil Wedlock

published 04 Feb 2021

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HDG-select: A novel GUI based application for gene selection and classification in high dimensional datasets

Shilan S. Hameed, Rohayanti Hassan, Wan Haslina Hassan, Fahmi F. Muhammadsharif, Liza Abdul Latiff

published 28 Jan 2021

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Precision long-read metagenomics sequencing for food safety by detection and assembly of Shiga toxin-producing Escherichia coli in irrigation water

Meghan Maguire, Julie A. Kase, Dwayne Roberson, Tim Muruvanda, Eric W. Brown, Marc Allard, Steven M. Musser, Narjol González-Escalona

published 14 Jan 2021

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Efficient association mapping from k-mers—An application in finding sex-specific sequences

Zakaria Mehrab, Jaiaid Mobin, Ibrahim Asadullah Tahmid, Atif Rahman

published 07 Jan 2021

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metaVaR: Introducing metavariant species models for reference-free metagenomic-based population genomics

Romuald Laso-Jadart, Christophe Ambroise, Pierre Peterlongo, Mohammed-Amin Madoui

published 30 Dec 2020

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Tracing the active genetic diversity of Microcystis and Microcystis phage through a temporal survey of Taihu

Helena L. Pound, Steven W. Wilhelm

published 28 Dec 2020

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Prediction of Burkholderia pseudomallei DsbA substrates identifies potential virulence factors and vaccine targets

Ben Vezina, Guillaume A. Petit, Jennifer L. Martin, Maria A. Halili

published 20 Nov 2020

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Comprehensive analysis of differential expression profiles via transcriptome sequencing in SH-SY5Y cells infected with CV-A16

Yajie Hu, Zhen Yang, Shenglan Wang, Danxiong Sun, Mingmei Zhong, Mudong Wen, Jie Song, Yunhui Zhang

published 06 Nov 2020

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Evaluating the number of different genomes in a metagenome by means of the compositional spectra approach

Valery Kirzhner, Dvora Toledano-Kitai, Zeev Volkovich

published 06 Nov 2020

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Complete genome sequence and analysis of Alcaligenes faecalis strain Mc250, a new potential plant bioinoculant

Érica Barbosa Felestrino, Angélica Bianchini Sanchez, Washington Luiz Caneschi, Camila Gracyelle de Carvalho Lemes, Renata de Almeida Barbosa Assis, Isabella Ferreira Cordeiro, Natasha Peixoto Fonseca, Morghana Marina Villa, Izadora Tabuso Vieira, Luciana Hiromi Yoshino Kamino, Flávio Fonseca do Carmo, Aline Maria da Silva, Andrew Maltez Thomas, José Salvatore Leister Patané, Fernanda Carla Ferreira, Leandro Grassi de Freitas, Alessandro de Mello Varani, Jesus Aparecido Ferro, Robson Soares Silva, Nalvo Franco Almeida, Camila Carrião Machado Garcia, João Carlos Setubal, Leandro Marcio Moreira

published 05 Nov 2020

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