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Microbial genetics

Prognosis of recurrent bacterial vaginosis based on longitudinal changes in abundance of Lactobacillus and specific species of Gardnerella

Essence Turner, Jack D. Sobel, Robert A. Akins

published 23 Aug 2021

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Distributed hybrid-indexing of compressed pan-genomes for scalable and fast sequence alignment

Altti Ilari Maarala, Ossi Arasalo, Daniel Valenzuela, Veli Mäkinen, Keijo Heljanko

published 03 Aug 2021

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Modeling neutral viral mutations in the spread of SARS-CoV-2 epidemics

Vitor M. Marquioni, Marcus A. M. de Aguiar

published 29 Jul 2021

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Return of individual research results: What do participants prefer and expect?

Sabina Sayeed, Robert Califf, Robert Green, Celeste Wong, Kenneth Mahaffey, Sanjiv Sam Gambhir, Jessica Mega, Bray Patrick-Lake, Kaylyn Frazier, Michael Pignone, Adrian Hernandez, Svati H. Shah, Alice C. Fan, Sarah Krüg, Terry Shaack, Scarlet Shore, Susie Spielman, Julie Eckstrand, Charlene A. Wong, on behalf of the Project Baseline Health Study Research Group

published 29 Jul 2021

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RNA polymerases in strict endosymbiont bacteria with extreme genome reduction show distinct erosions that might result in limited and differential promoter recognition

Cynthia Paola Rangel-Chávez, Edgardo Galán-Vásquez, Azucena Pescador-Tapia, Luis Delaye, Agustino Martínez-Antonio

published 29 Jul 2021

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Plasmid analysis of NDM metallo-β-lactamase-producing Enterobacterales isolated in Vietnam

Aki Hirabayashi, Koji Yahara, Satomi Mitsuhashi, So Nakagawa, Tadashi Imanishi, Van Thi Thu Ha, An Van Nguyen, Son Thai Nguyen, Keigo Shibayama, Masato Suzuki

published 28 Jul 2021

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Compositional analysis of ruminal bacteria from ewes selected for somatic cell score and milk persistency

Guillermo Martinez Boggio, Annabelle Meynadier, Pepus Daunis-i-Estadella, Christel Marie-Etancelin

published 26 Jul 2021

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Genomic insights into methicillin-resistant Staphylococcus pseudintermedius isolates from dogs and humans of the same sequence types reveals diversity in prophages and pathogenicity islands

Nathita Phumthanakorn, Sybille Schwendener, Valentina Donà, Pattrarat Chanchaithong, Vincent Perreten, Nuvee Prapasarakul

published 22 Jul 2021

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Comparative genomics of DNA-binding transcription factors in archaeal and bacterial organisms

Luis Martinez-Liu, Rafael Hernandez-Guerrero, Nancy Rivera-Gomez, Mario Alberto Martinez-Nuñez, Pedro Escobar-Turriza, Eveline Peeters, Ernesto Perez-Rueda

published 02 Jul 2021

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HIV-1 Gag gene mutations, treatment response and drug resistance to protease inhibitors: A systematic review and meta-analysis protocol

Alex Durand Nka, Georges Teto, Maria Mercedes Santoro, Valantine Ngum Ndze, Désiré Takou, Beatrice Dambaya, Ezechiel Ngoufack Jagni Semengue, Lavinia Fabeni, Carlo-Federico Perno, Vittorio Colizzi, Francesca Ceccherini-Silberstein, Joseph Fokam

published 01 Jul 2021

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High-throughput sequencing reveals genetic determinants associated with antibiotic resistance in Campylobacter spp. from farm-to-fork

Shaimaa F. Mouftah, José F. Cobo-Díaz, Avelino Álvarez-Ordóñez, Menattallah Elserafy, Nehal A. Saif, Asmaa Sadat, Ayman El-Shibiny, Mohamed Elhadidy

published 24 Jun 2021

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Evaluating coverage bias in next-generation sequencing of Escherichia coli

Samantha Gunasekera, Sam Abraham, Marc Stegger, Stanley Pang, Penghao Wang, Shafi Sahibzada, Mark O’Dea

published 24 Jun 2021

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Effect of disinfection agents and quantification of potentially viable Leptospira in fresh water samples using a highly sensitive integrity-qPCR assay

Elise Richard, Pascale Bourhy, Mathieu Picardeau, Laurent Moulin, Sébastien Wurtzer

published 26 May 2021

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