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Microbial genetics

Plasmid analysis of NDM metallo-β-lactamase-producing Enterobacterales isolated in Vietnam

Aki Hirabayashi, Koji Yahara, Satomi Mitsuhashi, So Nakagawa, Tadashi Imanishi, Van Thi Thu Ha, An Van Nguyen, Son Thai Nguyen, Keigo Shibayama, Masato Suzuki

published 28 Jul 2021

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Compositional analysis of ruminal bacteria from ewes selected for somatic cell score and milk persistency

Guillermo Martinez Boggio, Annabelle Meynadier, Pepus Daunis-i-Estadella, Christel Marie-Etancelin

published 26 Jul 2021

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Genomic insights into methicillin-resistant Staphylococcus pseudintermedius isolates from dogs and humans of the same sequence types reveals diversity in prophages and pathogenicity islands

Nathita Phumthanakorn, Sybille Schwendener, Valentina Donà, Pattrarat Chanchaithong, Vincent Perreten, Nuvee Prapasarakul

published 22 Jul 2021

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Comparative genomics of DNA-binding transcription factors in archaeal and bacterial organisms

Luis Martinez-Liu, Rafael Hernandez-Guerrero, Nancy Rivera-Gomez, Mario Alberto Martinez-Nuñez, Pedro Escobar-Turriza, Eveline Peeters, Ernesto Perez-Rueda

published 02 Jul 2021

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HIV-1 Gag gene mutations, treatment response and drug resistance to protease inhibitors: A systematic review and meta-analysis protocol

Alex Durand Nka, Georges Teto, Maria Mercedes Santoro, Valantine Ngum Ndze, Désiré Takou, Beatrice Dambaya, Ezechiel Ngoufack Jagni Semengue, Lavinia Fabeni, Carlo-Federico Perno, Vittorio Colizzi, Francesca Ceccherini-Silberstein, Joseph Fokam

published 01 Jul 2021

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High-throughput sequencing reveals genetic determinants associated with antibiotic resistance in Campylobacter spp. from farm-to-fork

Shaimaa F. Mouftah, José F. Cobo-Díaz, Avelino Álvarez-Ordóñez, Menattallah Elserafy, Nehal A. Saif, Asmaa Sadat, Ayman El-Shibiny, Mohamed Elhadidy

published 24 Jun 2021

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Evaluating coverage bias in next-generation sequencing of Escherichia coli

Samantha Gunasekera, Sam Abraham, Marc Stegger, Stanley Pang, Penghao Wang, Shafi Sahibzada, Mark O’Dea

published 24 Jun 2021

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Effect of disinfection agents and quantification of potentially viable Leptospira in fresh water samples using a highly sensitive integrity-qPCR assay

Elise Richard, Pascale Bourhy, Mathieu Picardeau, Laurent Moulin, Sébastien Wurtzer

published 26 May 2021

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Genomic GC content drifts downward in most bacterial genomes

Bert Ely

published 26 May 2021

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Influence of genetic background and dietary oleic acid on gut microbiota composition in Duroc and Iberian pigs

Adrián López-García, Rita Benítez, Yolanda Núñez, Emilio Gómez-Izquierdo, Eduardo de Mercado, Juan M. García-Casco, Óscar González-Recio, Clemente López-Bote, Jordi Estellé, Cristina Óvilo

published 20 May 2021

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Pseudoprevotella muciniphila gen. nov., sp. nov., a mucin-degrading bacterium attached to the bovine rumen epithelium

Sang Weon Na, Byung Hee Chun, Seok-Hyeon Beak, Shehzad Abid Khan, Md. Najmul Haque, Jae Sung Lee, Che Ok Jeon, Sang-Suk Lee, Myunggi Baik

published 20 May 2021

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Pool testing on random and natural clusters of individuals: Optimisation of SARS-CoV-2 surveillance in the presence of low viral load samples

Michela Baccini, Emilia Rocco, Irene Paganini, Alessandra Mattei, Cristina Sani, Giulia Vannucci, Simonetta Bisanzi, Elena Burroni, Marco Peluso, Armelle Munnia, Filippo Cellai, Giampaolo Pompeo, Laura Micio, Jessica Viti, Fabrizia Mealli, Francesca Maria Carozzi

published 18 May 2021

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Genome-wide identification of 5-methylcytosine sites in bacterial genomes by high-throughput sequencing of MspJI restriction fragments

Brian P. Anton, Alexey Fomenkov, Victoria Wu, Richard J. Roberts

published 11 May 2021

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