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Microbial genetics

A machine learning-based typing scheme refinement for Listeria monocytogenes core genome multilocus sequence typing with high discriminatory power for common source outbreak tracking

Yen-Yi Liu, Chih-Chieh Chen

High-quality whole-genome sequence analysis of Lactobacillus paragasseri UBLG-36 reveals oxalate-degrading potential of the strain

Yogita Mehra, Pragasam Viswanathan

Charting host-microbe co-metabolism in skin aging and application to metagenomics data

Wynand Alkema, Jos Boekhorst, [ ... ], Guus A. M. Kortman

LuNER: Multiplexed SARS-CoV-2 detection in clinical swab and wastewater samples

Elizabeth C. Stahl, Allan R. Gopez, [ ... ], IGI Testing Consortium

Profiling of Bacillus cereus on Canadian grain

Niradha Withana Gamage, Janice Bamforth, [ ... ], Sean Walkowiak

Nanopore sequencing of SARS-CoV-2: Comparison of short and long PCR-tiling amplicon protocols

Broňa Brejová, Kristína Boršová, [ ... ], Jozef Nosek

A bioinformatics pipeline for Mycobacterium tuberculosis sequencing that cleans contaminant reads from sputum samples

Betzaida Cuevas-Córdoba, Cristóbal Fresno, [ ... ], Xavier Soberón

Sequencing DNA with nanopores: Troubles and biases

Clara Delahaye, Jacques Nicolas

Genomic signatures of Lake Erie bacteria suggest interaction in the Microcystis phycosphere

Alexa K. Hoke, Guadalupe Reynoso, [ ... ], Morgan M. Steffen

Direct sequencing of measles virus complete genomes in the midst of a large-scale outbreak

Efrat Bucris, Victoria Indenbaum, [ ... ], Neta S. Zuckerman

Novel Drexlerviridae bacteriophage KMI8 with specific lytic activity against Klebsiella michiganensis and its biofilms

Heng Ku, Mwila Kabwe, [ ... ], Joseph Tucci

Inconsistent PCR detection of Shiga toxin-producing Escherichia coli: Insights from whole genome sequence analyses

Vinicius Silva Castro, Rodrigo Ortega Polo, [ ... ], Kim Stanford

Prognosis of recurrent bacterial vaginosis based on longitudinal changes in abundance of Lactobacillus and specific species of Gardnerella

Essence Turner, Jack D. Sobel, Robert A. Akins

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