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Microbial genetics

Calcitriol decreases HIV-1 transfer in vitro from monocyte-derived dendritic cells to CD4 + T cells, and downregulates the expression of DC-SIGN and SIGLEC-1

Natalia Alvarez, Sandra M. Gonzalez, Juan C. Hernandez, Maria T. Rugeles, Wbeimar Aguilar-Jimenez

published 08 Jul 2022

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High throughput SARS-CoV-2 variant analysis using molecular barcodes coupled with next generation sequencing

Lyora A. Cohen-Aharonov, Annie Rebibo-Sabbah, Adar Yaacov, Roy Z. Granit, Merav Strauss, Raul Colodner, Ori Cheshin, Shai Rosenberg, Ronen Eavri

published 21 Jun 2022

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MAECI: A pipeline for generating consensus sequence with nanopore sequencing long-read assembly and error correction

Jidong Lang

published 20 May 2022

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High quality genome annotation and expression visualisation of a mupirocin-producing bacterium

Anthony S. Haines, Steve G. Kendrew, Nicola Crowhurst, Elton R. Stephens, Jack Connolly, Joanne Hothersall, Claire E. Miller, Andrew J. Collis, Benjamin D. Huckle, Christopher M. Thomas

published 05 May 2022

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Isolation, identification, and whole-genome sequencing of high-yield protease bacteria from Daqu of ZhangGong Laojiu

Yanbo Liu, Junying Fu, Linlin Wang, Zhijun Zhao, Huihui Wang, Suna Han, Xiyu Sun, Chunmei Pan

published 26 Apr 2022

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Purification and characterization of antifungal lipopeptide produced by Bacillus velezensis isolated from raw honey

Zirui Ray Xiong, Mario Cobo, Randy M. Whittal, Abigail B. Snyder, Randy W. Worobo

published 06 Apr 2022

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Copy number variation of two begomovirus acquired and inoculated by different cryptic species of whitefly, Bemisia tabaci in Okra

Mritunjoy Barman, Snigdha Samanta, Swati Chakraborty, Arunava Samanta, Jayanta Tarafdar

published 30 Mar 2022

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An atlas of robust microbiome associations with phenotypic traits based on large-scale cohorts from two continents

Daphna Rothschild, Sigal Leviatan, Ariel Hanemann, Yossi Cohen, Omer Weissbrod, Eran Segal

published 24 Mar 2022

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Virulome and genome analyses identify associations between antimicrobial resistance genes and virulence factors in highly drug-resistant Escherichia coli isolated from veal calves

Bradd J. Haley, Seon Woo Kim, Serajus Salaheen, Ernest Hovingh, Jo Ann S. Van Kessel

published 17 Mar 2022

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dbGSRV: A manually curated database of genetic susceptibility to respiratory virus

Ping Li, Yan Zhang, Wenlong Shen, Shu Shi, Zhihu Zhao

published 17 Mar 2022

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Distinction of Paramecium strains by a combination method of RAPD analysis and multiplex PCR

Sonoko Matsumoto, Kenta Watanabe, Hiroko Kiyota, Masato Tachibana, Takashi Shimizu, Masahisa Watarai

published 11 Mar 2022

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Whole genome sequence of pan drug-resistant clinical isolate of Acinetobacter baumannii ST1890

Thanwa Wongsuk, Siriphan Boonsilp, Anchalee Homkaew, Konrawee Thananon, Worrapoj Oonanant

published 09 Mar 2022

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Effect of cryopreservation on A172 and U251 glioma cells infected with lentiviral vectors designed for CRISPR/Cas9-mediated aquaporin-8 knock-out

Hao Zhang, Shujuan Zhu, Yu Xing, Qian Liu, Zhen Guo, Ziling Cai, Zihao Shen, Qingqian Xia, Huajun Sheng

published 04 Mar 2022

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