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Microbial genetics

Similarities between bacterial GAD and human GAD65: Implications in gut mediated autoimmune type 1 diabetes

Suhana Bedi, Tiffany M. Richardson, Baofeng Jia, Hadeel Saab, Fiona S. L. Brinkman, Monica Westley

published 23 Feb 2022

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In silico, in vitro and in vivo safety evaluation of Limosilactobacillus reuteri strains ATCC PTA-126787 & ATCC PTA-126788 for potential probiotic applications

Dharanesh Gangaiah, Shrinivasrao P. Mane, Nilesh R. Tawari, Nallakannu Lakshmanan, Valerie Ryan, Alyssa Volland, Dwi Susanti, Milind Patel, Abraham Abouzeid, Emily B. Helmes, Arvind Kumar

published 26 Jan 2022

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Pooling saliva samples as an excellent option to increase the surveillance for SARS-CoV-2 when re-opening community settings

Joaquín Moreno-Contreras, Marco A. Espinoza, Carlos Sandoval-Jaime, Marco A. Cantú-Cuevas, Daniel A. Madrid-González, Héctor Barón-Olivares, Oscar D. Ortiz-Orozco, Asunción V. Muñoz-Rangel, Cecilia Guzmán-Rodríguez, Manuel Hernández-de la Cruz, César M. Eroza-Osorio, Carlos F. Arias, Susana López

published 25 Jan 2022

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Multilocus sequence based identification and adaptational strategies of Pseudomonas sp. from the supraglacial site of Sikkim Himalaya

Srijana Mukhia, Anil Kumar, Poonam Kumari, Rakshak Kumar, Sanjay Kumar

published 24 Jan 2022

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Machine learning classification of trajectories from molecular dynamics simulations of chromosome segregation

David Geisel, Peter Lenz

published 21 Jan 2022

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DeLUCS: Deep learning for unsupervised clustering of DNA sequences

Pablo Millán Arias, Fatemeh Alipour, Kathleen A. Hill, Lila Kari

published 21 Jan 2022

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Mycobacterial MMAR_2193 catalyzes O-methylation of diverse polyketide cores

Gorkha Raj Giri, Priti Saxena

published 05 Jan 2022

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Molecular subtyping for source tracking of Escherichia coli using core genome multilocus sequence typing at a food manufacturing plant

Ayaka Nakamura, Hajime Takahashi, Maki Arai, Tomoki Tsuchiya, Shohei Wada, Yuki Fujimoto, Yoshiomi Shimabara, Takashi Kuda, Bon Kimura

published 23 Dec 2021

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Phylogeography and phylogeny of Rhinoviruses collected from Severe Acute Respiratory Infection (SARI) cases over successive epidemic periods in Tunisia

Sondes Haddad-Boubaker, Cherif Ben Hamda, Kais Ghedira, Khaoula Mefteh, Aida Bouafsoun, Ilhem Boutiba-Ben Boubaker, Amin Slim, Khaled Menif, Henda Triki, Mohamed Ali Ben Hadj Kacem, Hanen Smaoui

published 22 Nov 2021

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A machine learning-based typing scheme refinement for Listeria monocytogenes core genome multilocus sequence typing with high discriminatory power for common source outbreak tracking

Yen-Yi Liu, Chih-Chieh Chen

published 19 Nov 2021

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High-quality whole-genome sequence analysis of Lactobacillus paragasseri UBLG-36 reveals oxalate-degrading potential of the strain

Yogita Mehra, Pragasam Viswanathan

published 19 Nov 2021

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Charting host-microbe co-metabolism in skin aging and application to metagenomics data

Wynand Alkema, Jos Boekhorst, Robyn T. Eijlander, Steve Schnittger, Fini De Gruyter, Sabina Lukovac, Kurt Schilling, Guus A. M. Kortman

published 10 Nov 2021

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LuNER: Multiplexed SARS-CoV-2 detection in clinical swab and wastewater samples

Elizabeth C. Stahl, Allan R. Gopez, Connor A. Tsuchida, Vinson B. Fan, Erica A. Moehle, Lea B. Witkowsky, Jennifer R. Hamilton, Enrique Lin-Shiao, Matthew McElroy, Shana L. McDevitt, Alison Ciling, C. Kimberly Tsui, Kathleen Pestal, Holly K. Gildea, Amanda Keller, Iman A. Sylvain, Clara Williams, Ariana Hirsh, Alexander J. Ehrenberg, Rose Kantor, Matthew Metzger, Kara L. Nelson, Fyodor D. Urnov, Bradley R. Ringeisen, Petros Giannikopoulos, Jennifer A. Doudna, IGI Testing Consortium

published 10 Nov 2021

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