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Microbial genetics

Improving Phrap-Based Assembly of the Rat Using “Reliable” Overlaps

Michael Roberts, Aleksey V. Zimin, Wayne Hayes, Brian R. Hunt, Cevat Ustun, James R. White, Paul Havlak, James Yorke

published 19 Mar 2008

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High Genetic Stability of Dengue Virus Propagated in MRC-5 Cells as Compared to the Virus Propagated in Vero Cells

Chia-Chyi Liu, Shiang-Chi Lee, Michael Butler, Suh-Chin Wu

published 19 Mar 2008

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Comparative Analysis of Acinetobacters: Three Genomes for Three Lifestyles

David Vallenet, Patrice Nordmann, Valérie Barbe, Laurent Poirel, Sophie Mangenot, Elodie Bataille, Carole Dossat, Shahinaz Gas, Annett Kreimeyer, Patricia Lenoble, Sophie Oztas, Julie Poulain, Béatrice Segurens, Catherine Robert, Chantal Abergel, Jean-Michel Claverie, Didier Raoult, Claudine Médigue, Jean Weissenbach, Stéphane Cruveiller

published 19 Mar 2008

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Comparative Bacterial Proteomics: Analysis of the Core Genome Concept

Stephen J. Callister, Lee Ann McCue, Joshua E. Turse, Matthew E. Monroe, Kenneth J. Auberry, Richard D. Smith, Joshua N. Adkins, Mary S. Lipton

published 06 Feb 2008

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The Sorcerer II Global Ocean Sampling Expedition: Metagenomic Characterization of Viruses within Aquatic Microbial Samples

Shannon J. Williamson, Douglas B. Rusch, Shibu Yooseph, Aaron L. Halpern, Karla B. Heidelberg, John I. Glass, Cynthia Andrews-Pfannkoch, Douglas Fadrosh, Christopher S. Miller, Granger Sutton, Marvin Frazier, J. Craig Venter

published 23 Jan 2008

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Genome Biology of Actinobacillus pleuropneumoniae JL03, an Isolate of Serotype 3 Prevalent in China

Zhuofei Xu, Yan Zhou, Liangjun Li, Rui Zhou, Shaobo Xiao, Yun Wan, Sihua Zhang, Kai Wang, Wei Li, Lu Li, Hui Jin, Mingsong Kang, Baolige Dalai, Tingting Li, Lei Liu, Yangyi Cheng, Lei Zhang, Tao Xu, Huajun Zheng, Shiying Pu, Bofei Wang, Wenyi Gu, Xiang-Lin Zhang, Geng-Feng Zhu, Shengyue Wang, Guo-Ping Zhao, Huanchun Chen

published 16 Jan 2008

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Identification of Prophages in Bacterial Genomes by Dinucleotide Relative Abundance Difference

K. V. Srividhya, V. Alaguraj, G. Poornima, Dinesh Kumar, G. P. Singh, L. Raghavenderan, A. V. S. K. Mohan Katta, Preeti Mehta, S. Krishnaswamy

published 21 Nov 2007

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K13 Blocks KSHV Lytic Replication and Deregulates vIL6 and hIL6 Expression: A Model of Lytic Replication Induced Clonal Selection in Viral Oncogenesis

Jinshun Zhao, Vasu Punj, Hittu Matta, Lucia Mazzacurati, Sandra Schamus, Yanqiang Yang, Tianbing Yang, Yan Hong, Preet M. Chaudhary

published 24 Oct 2007

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Horizontal Gene Transfer Regulation in Bacteria as a “Spandrel” of DNA Repair Mechanisms

Saliou Fall, Anne Mercier, Franck Bertolla, Alexandra Calteau, Laurent Gueguen, Guy Perrière, Timothy M. Vogel, Pascal Simonet

published 24 Oct 2007

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Murine Gammaherpesvirus-68 Inhibits Antigen Presentation by Dendritic Cells

Christopher M. Smith, Michael B. Gill, Janet S. May, Philip G. Stevenson

published 17 Oct 2007

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Deinococcus geothermalis: The Pool of Extreme Radiation Resistance Genes Shrinks

Kira S. Makarova, Marina V. Omelchenko, Elena K. Gaidamakova, Vera Y. Matrosova, Alexander Vasilenko, Min Zhai, Alla Lapidus, Alex Copeland, Edwin Kim, Miriam Land, Konstantinos Mavromatis, Samuel Pitluck, Paul M. Richardson, Chris Detter, Thomas Brettin, Elizabeth Saunders, Barry Lai, Bruce Ravel, Kenneth M. Kemner, Yuri I. Wolf, Alexander Sorokin, Anna V. Gerasimova, Mikhail S. Gelfand, James K. Fredrickson, Eugene V. Koonin, Michael J. Daly

published 26 Sep 2007

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Metagenomics of the Deep Mediterranean, a Warm Bathypelagic Habitat

Ana-Belen Martín-Cuadrado, Purificación López-García, Juan-Carlos Alba, David Moreira, Luis Monticelli, Axel Strittmatter, Gerhard Gottschalk, Francisco Rodríguez-Valera

published 19 Sep 2007

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Selection against Spurious Promoter Motifs Correlates with Translational Efficiency across Bacteria

Jeffrey L. Froula, M. Pilar Francino

published 15 Aug 2007

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