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Microbial genetics

High Throughput Sequencing and Proteomics to Identify Immunogenic Proteins of a New Pathogen: The Dirty Genome Approach

Gilbert Greub, Carole Kebbi-Beghdadi, Claire Bertelli, François Collyn, Beat M. Riederer, Camille Yersin, Antony Croxatto, Didier Raoult

published 23 Dec 2009

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Pebble and Rock Band: Heuristic Resolution of Repeats and Scaffolding in the Velvet Short-Read de Novo Assembler

Daniel R. Zerbino, Gayle K. McEwen, Elliott H. Margulies, Ewan Birney

published 22 Dec 2009

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Antigen Diversity in the Parasitic Bacterium Anaplasma phagocytophilum Arises from Selectively-Represented, Spatially Clustered Functional Pseudogenes

Janet E. Foley, Nathan C. Nieto, Anthony Barbet, Patrick Foley

published 15 Dec 2009

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Systems-Level Comparison of Host-Responses Elicited by Avian H5N1 and Seasonal H1N1 Influenza Viruses in Primary Human Macrophages

Suki M. Y. Lee, Jennifer L. Gardy, C. Y. Cheung, Timothy K. W. Cheung, Kenrie P. Y. Hui, Nancy Y. Ip, Y. Guan, Robert E. W. Hancock, J. S. Malik Peiris

published 14 Dec 2009

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Examination of Genome Homogeneity in Prokaryotes Using Genomic Signatures

Jon Bohlin, Eystein Skjerve

published 02 Dec 2009

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The Association of Virulence Factors with Genomic Islands

Shannan J. Ho Sui, Amber Fedynak, William W. L. Hsiao, Morgan G. I. Langille, Fiona S. L. Brinkman

published 01 Dec 2009

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Gene Context Analysis in the Integrated Microbial Genomes (IMG) Data Management System

Konstantinos Mavromatis, Ken Chu, Natalia Ivanova, Sean D. Hooper, Victor M. Markowitz, Nikos C. Kyrpides

published 24 Nov 2009

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Gene Expression Profiling during Early Acute Febrile Stage of Dengue Infection Can Predict the Disease Outcome

Eduardo J. M. Nascimento, Ulisses Braga-Neto, Carlos E. Calzavara-Silva, Ana L. V. Gomes, Frederico G. C. Abath, Carlos A. A. Brito, Marli T. Cordeiro, Ana M. Silva, Cecilia Magalhães, Raoni Andrade, Laura H. V. G. Gil, Ernesto T. A. Marques Jr

published 19 Nov 2009

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Genotyping of Genetically Monomorphic Bacteria: DNA Sequencing in Mycobacterium tuberculosis Highlights the Limitations of Current Methodologies

Iñaki Comas, Susanne Homolka, Stefan Niemann, Sebastien Gagneux

published 12 Nov 2009

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Genome Sequence of the Versatile Fish Pathogen Edwardsiella tarda Provides Insights into its Adaptation to Broad Host Ranges and Intracellular Niches

Qiyao Wang, Minjun Yang, Jingfan Xiao, Haizhen Wu, Xin Wang, Yuanzhi Lv, Lili Xu, Huajun Zheng, Shengyue Wang, Guoping Zhao, Qin Liu, Yuanxing Zhang

published 29 Oct 2009

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Genome-Wide Identification of Transcription Start Sites, Promoters and Transcription Factor Binding Sites in E. coli

Alfredo Mendoza-Vargas, Leticia Olvera, Maricela Olvera, Ricardo Grande, Leticia Vega-Alvarado, Blanca Taboada, Verónica Jimenez-Jacinto, Heladia Salgado, Katy Juárez, Bruno Contreras-Moreira, Araceli M. Huerta, Julio Collado-Vides, Enrique Morett

published 19 Oct 2009

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Functional Dissection of Streptococcus pyogenes M5 Protein: the Hypervariable Region is Essential for Virulence

Johan Waldemarsson, Margaretha Stålhammar-Carlemalm, Charlotta Sandin, Francis J. Castellino, Gunnar Lindahl

published 01 Oct 2009

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Optimizing Taq Polymerase Concentration for Improved Signal-to-Noise in the Broad Range Detection of Low Abundance Bacteria

Rudolph Spangler, Noel L. Goddard, David S. Thaler

published 15 Sep 2009

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