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Microbial evolution

Modeling neutral viral mutations in the spread of SARS-CoV-2 epidemics

Vitor M. Marquioni, Marcus A. M. de Aguiar

published 29 Jul 2021

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SARS-CoV-2 variant evolution in the United States: High accumulation of viral mutations over time likely through serial Founder Events and mutational bursts

Rafail Nikolaos Tasakis, Georgios Samaras, Anna Jamison, Michelle Lee, Alexandra Paulus, Gabrielle Whitehouse, Laurent Verkoczy, F. Nina Papavasiliou, Marilyn Diaz

published 23 Jul 2021

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Heterogeneity matters: Contact structure and individual variation shape epidemic dynamics

Gerrit Großmann, Michael Backenköhler, Verena Wolf

published 20 Jul 2021

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Genomic and immunogenic changes of Piscine novirhabdovirus (Viral Hemorrhagic Septicemia Virus) over its evolutionary history in the Laurentian Great Lakes

Megan D. Niner, Carol A. Stepien, Bartolomeo Gorgoglione, Douglas W. Leaman

published 28 May 2021

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Machine-learning a virus assembly fitness landscape

Pierre-Philippe Dechant, Yang-Hui He

published 05 May 2021

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Risk of rapid evolutionary escape from biomedical interventions targeting SARS-CoV-2 spike protein

Debra Van Egeren, Alexander Novokhodko, Madison Stoddard, Uyen Tran, Bruce Zetter, Michael Rogers, Bradley L. Pentelute, Jonathan M. Carlson, Mark Hixon, Diane Joseph-McCarthy, Arijit Chakravarty

published 28 Apr 2021

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Probability of consolidation constrains novel serotype emergence in dengue fever virus

Gilberto Sánchez-González, Zachery R. Belak, Luis Lozano, Renaud Condé

published 05 Apr 2021

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The characteristics and evolution of pulmonary fibrosis in COVID-19 patients as assessed by AI-assisted chest HRCT

Jia-Ni Zou, Liu Sun, Bin-Ru Wang, You Zou, Shan Xu, Yong-Jun Ding, Li-Jun Shen, Wen-Cai Huang, Xiao-Jing Jiang, Shi-Ming Chen

published 23 Mar 2021

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Structural analysis of viral ExoN domains reveals polyphyletic hijacking events

Adrián Cruz-González, Israel Muñoz-Velasco, Wolfgang Cottom-Salas, Arturo Becerra, José A. Campillo-Balderas, Ricardo Hernández-Morales, Alberto Vázquez-Salazar, Rodrigo Jácome, Antonio Lazcano

published 17 Mar 2021

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Genomic characterization and evolution of SARS-CoV-2 of a Canadian population

Manna Zhang, Lin Li, Ma Luo, Binhua Liang

published 04 Mar 2021

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Granick revisited: Synthesizing evolutionary and ecological evidence for the late origin of bacteriochlorophyll via ghost lineages and horizontal gene transfer

Lewis M. Ward, Patrick M. Shih

published 28 Jan 2021

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Metagenomic sequencing generates the whole genomes of porcine rotavirus A, C, and H from the United States

Jennifer J. A. Hull, Mingpu Qi, Anna M. Montmayeur, Deepak Kumar, Daniel E. Velasquez, Sung-Sil Moon, Laura Cristal Magaña, Naga Betrapally, Terry Fei Fan Ng, Baoming Jiang, Douglas Marthaler

published 29 Dec 2020

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Mutational networks of escape from transmitted HIV-1 infection

Elma H. Akand, Stephen J. Maher, John M. Murray

published 07 Dec 2020

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