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Microbial evolution

Unconstrained coevolution of bacterial size and the latent period of plastic phage

Juan A. Bonachela, Melinda Choua, Michael R. Heath

published 26 May 2022

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Deep phylogenetic-based clustering analysis uncovers new and shared mutations in SARS-CoV-2 variants as a result of directional and convergent evolution

Danilo Rosa Nunes, Carla Torres Braconi, Louisa F. Ludwig-Begall, Clarice Weis Arns, Ricardo Durães-Carvalho

published 24 May 2022

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Analysis of temporal changes in HIV-1 CRF01_AE gag genetic variability and CD8 T-cell epitope evolution

Wardah Rafaqat, Uroosa Tariq, Nida Farooqui, Maheen Zaidi, Aanish Raees, Maaz Zuberi, Amna Batool, Syed Hani Abidi

published 10 May 2022

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Genetic characterization of upper respiratory tract virome from nonvaccinated Egyptian cow-calf operations

Abdou Nagy, Fatma Abdallah, Hend M. El Damaty, Ahmed Tariq, Abdallah M. A. Merwad, Bader Y. Alhatlani, Ibrahim Elsohaby

published 05 May 2022

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Genomic heterogeneity underlies multidrug resistance in Pseudomonas aeruginosa: A population-level analysis beyond susceptibility testing

Laura J. Rojas, Mohamad Yasmin, Jacquelynn Benjamino, Steven M. Marshall, Kailynn J. DeRonde, Nikhil P. Krishnan, Federico Perez, Andrew A. Colin, Monica Cardenas, Octavio Martinez, Armando Pérez-Cardona, Daniel D. Rhoads, Michael R. Jacobs, John J. LiPuma, Michael W. Konstan, Alejandro J. Vila, Andrea Smania, Andrew R. Mack, Jacob G. Scott, Mark D. Adams, Lilian M. Abbo, Robert A. Bonomo

published 31 Mar 2022

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Consecutive deletions in a unique Uruguayan SARS-CoV-2 lineage evidence the genetic variability potential of accessory genes

Yanina Panzera, Lucía Calleros, Natalia Goñi, Ana Marandino, Claudia Techera, Sofía Grecco, Natalia Ramos, Sandra Frabasile, Gonzalo Tomás, Emma Condon, María Noel Cortinas, Viviana Ramas, Leticia Coppola, Cecilia Sorhouet, Cristina Mogdasy, Héctor Chiparelli, Juan Arbiza, Adriana Delfraro, Ruben Pérez

published 17 Feb 2022

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Genomic surveillance of SARS-CoV-2 Spike gene by sanger sequencing

Tiago Souza Salles, Andrea Cony Cavalcanti, Fábio Burack da Costa, Vanessa Zaquieu Dias, Leandro Magalhães de Souza, Marcelo Damião Ferreira de Meneses, José Antônio Suzano da Silva, Cinthya Domingues Amaral, Jhonatan Ramos Felix, Duleide Alves Pereira, Stefanella Boatto, Maria Angélica Arpon Marandino Guimarães, Davis Fernandes Ferreira, Renata Campos Azevedo

published 20 Jan 2022

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Divergence together with microbes: A comparative study of the associated microbiomes in the closely related Littorina species

Arina L. Maltseva, Marina A. Varfolomeeva, Elizaveta R. Gafarova, Marina A. Z. Panova, Natalia A. Mikhailova, Andrei I. Granovitch

published 21 Dec 2021

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Local occurrence and fast spread of B.1.1.7 lineage: A glimpse into Friuli Venezia Giulia

Catia Mio, Chiara Dal Secco, Stefania Marzinotto, Claudio Bruno, Santa Pimpo, Elena Betto, Martina Bertoni, Corrado Pipan, Emanuela Sozio, Carlo Tascini, Giuseppe Damante, Francesco Curcio

published 14 Dec 2021

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Application of principal component analysis on temporal evolution of COVID-19

Ashadun Nobi, Kamrul Hasan Tuhin, Jae Woo Lee

published 02 Dec 2021

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Phylogeography and phylogeny of Rhinoviruses collected from Severe Acute Respiratory Infection (SARI) cases over successive epidemic periods in Tunisia

Sondes Haddad-Boubaker, Cherif Ben Hamda, Kais Ghedira, Khaoula Mefteh, Aida Bouafsoun, Ilhem Boutiba-Ben Boubaker, Amin Slim, Khaled Menif, Henda Triki, Mohamed Ali Ben Hadj Kacem, Hanen Smaoui

published 22 Nov 2021

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Modelling digital and manual contact tracing for COVID-19. Are low uptakes and missed contacts deal-breakers?

Andrei C. Rusu, Rémi Emonet, Katayoun Farrahi

published 18 Nov 2021

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Evaluation of the SARS-CoV-2 positivity ratio and upper respiratory tract viral load among asymptomatic individuals screened before hospitalization or surgery in Flanders, Belgium

Laura Heireman, Steven Abrams, Peggy Bruynseels, Reinoud Cartuyvels, Lize Cuypers, Pieter De Schouwer, Wim Laffut, Katrien Lagrou, Niel Hens, Erwin Ho, Elizaveta Padalko, Marijke Reynders, Sarah Vandamme, Nathalie Van der Moeren, Walter Verstrepen, Philippe Willems, Reinout Naesens

published 11 Nov 2021

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