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Microbial evolution

Trait and plasticity evolution under competition and mutualism in evolving pairwise yeast communities

ShengPei Wang, Renuka Agarwal, Kari A. Segraves, David M. Althoff

Genomic characterization of SARS-CoV-2 from vaccine breakthrough cases in Allegheny County, Pennsylvania

Kady D. Waggle, Marissa P. Griffith, [ ... ], Jane W. Marsh

Passage of human-origin influenza A virus in swine tracheal epithelial cells selects for adaptive mutations in the hemagglutinin gene

Jongsuk Mo, Lucas M. Ferreri, [ ... ], Daniela S. Rajao

Increased preference for lysine over arginine in spike proteins of SARS-CoV-2 BA.2.86 variant and its daughter lineages

Anže Božič, Rudolf Podgornik

Variant evolution graph: Can we infer how SARS-CoV-2 variants are evolving?

Badhan Das, Lenwood S. Heath

SARS-CoV-2 sequencing artifacts associated with targeted PCR enrichment and read mapping

Kirsten Maren Ellegaard, Vithiagaran Gunalan, [ ... ], Marc Stegger

Transmission matrix parameter estimation of COVID-19 evolution with age compartments using ensemble-based data assimilation

Santiago Rosa, Manuel A. Pulido, Juan J. Ruiz, Tadeo J. Cocucci

Genetic diversity of alpha and betacoronaviruses in cave and temple-roosting bats in Vientiane Province, Lao PDR

Illich Manfred Mombo, Novy Charel Bobouaka Bonguili, [ ... ], Sabrina Locatelli

Identification and genetic characterization of Jingmen tick virus from ticks sampled in select regions of Kenya; 2022–2024

Lydia Mwasi, Samoel Khamadi, [ ... ], Fredrick Eyase

Numerical investigation of a reaction-diffusion model used for rumor spreading in a ‘street’

Feiyun Pei, Yamin Du

Structural and evolutionary constraints shape adaptive landscapes of immune-related genes across mammalian phylogeny

Zhengtian Li, Mubbashar Hassan, [ ... ], Farid S. Ataya

Genomic evolution of SARS-CoV-2 delta variants pre- and post-omicron emergence using alignment-free machine learning models

Sathish Sankar, Kaushika Anandharaman, [ ... ], Esaki M. Shankar

A socio-ecological System Dynamics model of antimicrobial use and resistance

Carys J. Redman-White, Birgit Kopainsky, [ ... ], Dominic Moran

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