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Microbial evolution

Assessment of positive selection across SARS-CoV-2 variants via maximum likelihood

Carly Middleton, Laura Kubatko

Trait and plasticity evolution under competition and mutualism in evolving pairwise yeast communities

ShengPei Wang, Renuka Agarwal, Kari A. Segraves, David M. Althoff

Genomic characterization of SARS-CoV-2 from vaccine breakthrough cases in Allegheny County, Pennsylvania

Kady D. Waggle, Marissa P. Griffith, [ ... ], Jane W. Marsh

Variant evolution graph: Can we infer how SARS-CoV-2 variants are evolving?

Badhan Das, Lenwood S. Heath

Increased preference for lysine over arginine in spike proteins of SARS-CoV-2 BA.2.86 variant and its daughter lineages

Anže Božič, Rudolf Podgornik

Genetic diversity of alpha and betacoronaviruses in cave and temple-roosting bats in Vientiane Province, Lao PDR

Illich Manfred Mombo, Novy Charel Bobouaka Bonguili, [ ... ], Sabrina Locatelli

SARS-CoV-2 sequencing artifacts associated with targeted PCR enrichment and read mapping

Kirsten Maren Ellegaard, Vithiagaran Gunalan, [ ... ], Marc Stegger

Transmission matrix parameter estimation of COVID-19 evolution with age compartments using ensemble-based data assimilation

Santiago Rosa, Manuel A. Pulido, Juan J. Ruiz, Tadeo J. Cocucci

Structural and evolutionary constraints shape adaptive landscapes of immune-related genes across mammalian phylogeny

Zhengtian Li, Mubbashar Hassan, [ ... ], Farid S. Ataya

Identification and genetic characterization of Jingmen tick virus from ticks sampled in select regions of Kenya; 2022–2024

Lydia Mwasi, Samoel Khamadi, [ ... ], Fredrick Eyase

Numerical investigation of a reaction-diffusion model used for rumor spreading in a ‘street’

Feiyun Pei, Yamin Du

A socio-ecological System Dynamics model of antimicrobial use and resistance

Carys J. Redman-White, Birgit Kopainsky, [ ... ], Dominic Moran

Genomic evolution of SARS-CoV-2 delta variants pre- and post-omicron emergence using alignment-free machine learning models

Sathish Sankar, Kaushika Anandharaman, [ ... ], Esaki M. Shankar

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