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Microbial evolution

The Threshold Bootstrap Clustering: A New Approach to Find Families or Transmission Clusters within Molecular Quasispecies

Mattia C. F. Prosperi, Andrea De Luca, Simona Di Giambenedetto, Laura Bracciale, Massimiliano Fabbiani, Roberto Cauda, Marco Salemi

published 25 Oct 2010

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Evolutionary Trajectory of White Spot Syndrome Virus (WSSV) Genome Shrinkage during Spread in Asia

Mark P. Zwart, Bui Thi Minh Dieu, Lia Hemerik, Just M. Vlak

published 14 Oct 2010

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From Grazing Resistance to Pathogenesis: The Coincidental Evolution of Virulence Factors

Sandrine Adiba, Clément Nizak, Minus van Baalen, Erick Denamur, Frantz Depaulis

published 11 Aug 2010

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Molecular Evolution of the Primate Antiviral Restriction Factor Tetherin

Jun Liu, Keping Chen, Jian-Hua Wang, Chiyu Zhang

published 30 Jul 2010

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Phylogenetic and Evolutionary Patterns in Microbial Carotenoid Biosynthesis Are Revealed by Comparative Genomics

Jonathan L. Klassen

published 22 Jun 2010

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The Re-Emergence of H1N1 Influenza Virus in 1977: A Cautionary Tale for Estimating Divergence Times Using Biologically Unrealistic Sampling Dates

Joel O. Wertheim

published 17 Jun 2010

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Molecular Evolutionary Analysis of the Influenza A(H1N1)pdm, May–September, 2009: Temporal and Spatial Spreading Profile of the Viruses in Japan

Teiichiro Shiino, Nobuhiko Okabe, Yoshinori Yasui, Tomimasa Sunagawa, Makoto Ujike, Masatsugu Obuchi, Noriko Kishida, Hong Xu, Emi Takashita, Akane Anraku, Reiko Ito, Teruko Doi, Miho Ejima, Hiromi Sugawara, Hiroshi Horikawa, Shuji Yamazaki, Yumiko Kato, Akio Oguchi, Nobuyuki Fujita, Takato Odagiri, Masato Tashiro, Haruo Watanabe

published 10 Jun 2010

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The GimA Locus of Extraintestinal Pathogenic E. coli: Does Reductive Evolution Correlate with Habitat and Pathotype?

Timo Homeier, Torsten Semmler, Lothar H. Wieler, Christa Ewers

published 28 May 2010

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Rhinovirus Genome Evolution during Experimental Human Infection

Samuel Cordey, Thomas Junier, Daniel Gerlach, Francesca Gobbini, Laurent Farinelli, Evgeny M. Zdobnov, Birgit Winther, Caroline Tapparel, Laurent Kaiser

published 11 May 2010

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Guidelines for Identifying Homologous Recombination Events in Influenza A Virus

Maciej F. Boni, Menno D. de Jong, H. Rogier van Doorn, Edward C. Holmes

published 03 May 2010

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Initial Fitness Recovery of HIV-1 Is Associated with Quasispecies Heterogeneity and Can Occur without Modifications in the Consensus Sequence

Antonio V. Bordería, Ramon Lorenzo-Redondo, Maria Pernas, Concepción Casado, Tamara Alvaro, Esteban Domingo, Cecilio Lopez-Galindez

published 26 Apr 2010

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The HIV-1 Integrase Mutations Y143C/R Are an Alternative Pathway for Resistance to Raltegravir and Impact the Enzyme Functions

Sandrine Reigadas, Guerric Anies, Bernard Masquelier, Christina Calmels, Lieven J. Stuyver, Vincent Parissi, Herve Fleury, Marie-Line Andreola

published 26 Apr 2010

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Phytoplankton Biogeography and Community Stability in the Ocean

Pedro Cermeño, Colomban de Vargas, Fátima Abrantes, Paul G. Falkowski

published 02 Apr 2010

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