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Microbial evolution

Evolution of class 1 integrons: Mobilization and dispersal via food-borne bacteria

Timothy M. Ghaly, Louise Chow, [ ... ], Michael R. Gillings

Quantitative Deep Sequencing Reveals Dynamic HIV-1 Escape and Large Population Shifts during CCR5 Antagonist Therapy In Vivo

Athe M. N. Tsibris, Bette Korber, [ ... ], Daniel R. Kuritzkes

Evolution of Robustness to Noise and Mutation in Gene Expression Dynamics

Kunihiko Kaneko

Genotypic and Pathotypic Characterization of Newcastle Disease Viruses from India

Krishnaswamy G. Tirumurugaan, Sunil Kapgate, [ ... ], Subbiah Elankumaran

HLA-Associated Immune Escape Pathways in HIV-1 Subtype B Gag, Pol and Nef Proteins

Zabrina L. Brumme, Mina John, [ ... ], Simon Mallal

Epidemiology and Evolution of Rotaviruses and Noroviruses from an Archival WHO Global Study in Children (1976–79) with Implications for Vaccine Design

Lauren A. Rackoff, Karin Bok, Kim Y. Green, Albert Z. Kapikian

FREQ-Seq: A Rapid, Cost-Effective, Sequencing-Based Method to Determine Allele Frequencies Directly from Mixed Populations

Lon M. Chubiz, Ming-Chun Lee, Nigel F. Delaney, Christopher J. Marx

Variant analysis of 1,040 SARS-CoV-2 genomes

Eric C. Rouchka, Julia H. Chariker, Donghoon Chung

Phylogenetic and Evolutionary Patterns in Microbial Carotenoid Biosynthesis Are Revealed by Comparative Genomics

Jonathan L. Klassen

High Temperature and Bacteriophages Can Indirectly Select for Bacterial Pathogenicity in Environmental Reservoirs

Ville-Petri Friman, Teppo Hiltunen, [ ... ], Jaana K. H. Bamford

Toward an Efficient Method of Identifying Core Genes for Evolutionary and Functional Microbial Phylogenies

Nicola Segata, Curtis Huttenhower

Normal Mutation Rate Variants Arise in a Mutator (Mut S) Escherichia coli Population

María-Carmen Turrientes, Fernando Baquero, [ ... ], Juan-Carlos Galán

Shaping the Growth Behaviour of Biofilms Initiated from Bacterial Aggregates

Gavin Melaugh, Jaime Hutchison, [ ... ], Rosalind J. Allen

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