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Microbial evolution

AutoPhy: Automated phylogenetic identification of novel protein subfamilies

Adrian N. Ortiz-Velez, Jeet Sukumaran, Ryin Rouzbehani, Scott T. Kelley

published 11 Jan 2024

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Molecular evidence for potential transovarial transmission of Dabieshan tick virus in Haemaphysalis longicornis from Shandong Province, China

Anan Wang, Yunfeng Tang, Zheng Pang, Yaxuan Gong, Jintao Wu, Jun Qi, Guoyu Niu

published 22 Dec 2023

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A deterministic compartmental model for the transition between variants in the spread of Covid-19 in Italy

Mario Saviano, Annalisa Fierro, Antonella Liccardo

published 14 Nov 2023

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Antibody escape, the risk of serotype formation, and rapid immune waning: Modeling the implications of SARS-CoV-2 immune evasion

Catherine Albright, Debra Van Egeren, Aditya Thakur, Arijit Chakravarty, Laura F. White, Madison Stoddard

published 18 Oct 2023

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Integrating gene expression data into a genome-scale metabolic model to identify reprogramming during adaptive evolution

Shaghayegh Yazdanpanah, Ehsan Motamedian, Seyed Abbas Shojaosadati

published 03 Oct 2023

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Assessment of positive selection across SARS-CoV-2 variants via maximum likelihood

Carly Middleton, Laura Kubatko

published 14 Sep 2023

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Optimal age-specific vaccination control for COVID-19: An Irish case study

Eleni Zavrakli, Andrew Parnell, David Malone, Ken Duffy, Subhrakanti Dey

published 05 Sep 2023

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In silico epitope prediction and evolutionary analysis reveals capsid mutation patterns for enterovirus B

Hui Wang, Yulu Fang, Yongtao Jia, Jiajie Tang, Changzheng Dong

published 28 Aug 2023

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The chaos law is a principal driver of natural selection: A proposition on the evolution of recently emerged coronaviruses

Pier Francesco Roggero, Arianna Calistri, Giorgio Palù

published 24 Aug 2023

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Microbiome distribution modeling using gradient descent strategies for mock, in vitro and clinical community distributions

Juan Ricardo Velasco-Álvarez, Nimbe Torres y Torres, Isaac Chairez, José Luis Castrejón-Flores

published 21 Aug 2023

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A macroecological perspective on genetic diversity in the human gut microbiome

William R. Shoemaker

published 21 Jul 2023

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SARS-CoV-2 protein structure and sequence mutations: Evolutionary analysis and effects on virus variants

Ugo Lomoio, Barbara Puccio, Giuseppe Tradigo, Pietro Hiram Guzzi, Pierangelo Veltri

published 20 Jul 2023

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Characterizing engagement dynamics across topics on Facebook

Gabriele Etta, Emanuele Sangiorgio, Niccolò Di Marco, Michele Avalle, Antonio Scala, Matteo Cinelli, Walter Quattrociocchi

published 28 Jun 2023

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