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Microbial evolution

Proteotyping to Establish Gene Origin within Reassortant Influenza Viruses

Ji-won Ha, Alexander B. Schwahn, Kevin M. Downard

published 31 Jan 2011

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Dynamics of Viral Evolution and CTL Responses in HIV-1 Infection

Yi Liu, John P. McNevin, Sarah Holte, M. Juliana McElrath, James I. Mullins

published 20 Jan 2011

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Evolutionary and Structural Features of the C2, V3 and C3 Envelope Regions Underlying the Differences in HIV-1 and HIV-2 Biology and Infection

Helena Barroso, Pedro Borrego, Inês Bártolo, José Maria Marcelino, Carlos Família, Alexandre Quintas, Nuno Taveira

published 20 Jan 2011

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Taking Multiple Infections of Cells and Recombination into Account Leads to Small Within-Host Effective-Population-Size Estimates of HIV-1

Rajesh Balagam, Vasantika Singh, Aparna Raju Sagi, Narendra M. Dixit

published 13 Jan 2011

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Robust Computational Analysis of rRNA Hypervariable Tag Datasets

Maksim Sipos, Patricio Jeraldo, Nicholas Chia, Ani Qu, A. Singh Dhillon, Michael E. Konkel, Karen E. Nelson, Bryan A. White, Nigel Goldenfeld

published 31 Dec 2010

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Dynamics of Glycoprotein Charge in the Evolutionary History of Human Influenza

Nimalan Arinaminpathy, Bryan Grenfell

published 30 Dec 2010

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Evolutionary History and Population Dynamics of Hepatitis E Virus

Michael A. Purdy, Yury E. Khudyakov

published 17 Dec 2010

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Evolution of an Agriculture-Associated Disease Causing Campylobacter coli Clade: Evidence from National Surveillance Data in Scotland

Samuel K. Sheppard, John F. Dallas, Daniel J. Wilson, Norval J. C. Strachan, Noel D. McCarthy, Keith A. Jolley, Frances M. Colles, Ovidiu Rotariu, Iain D. Ogden, Ken J. Forbes, Martin C. J. Maiden

published 15 Dec 2010

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Evolution of Cooperative Cross-Feeding Could Be Less Challenging Than Originally Thought

Sylvie Estrela, Ivana Gudelj

published 29 Nov 2010

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Characterization of the Fecal Microbiome from Non-Human Wild Primates Reveals Species Specific Microbial Communities

Suleyman Yildirim, Carl J. Yeoman, Maksim Sipos, Manolito Torralba, Brenda A. Wilson, Tony L. Goldberg, Rebecca M. Stumpf, Steven R. Leigh, Bryan A. White, Karen E. Nelson

published 12 Nov 2010

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The Threshold Bootstrap Clustering: A New Approach to Find Families or Transmission Clusters within Molecular Quasispecies

Mattia C. F. Prosperi, Andrea De Luca, Simona Di Giambenedetto, Laura Bracciale, Massimiliano Fabbiani, Roberto Cauda, Marco Salemi

published 25 Oct 2010

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Evolutionary Trajectory of White Spot Syndrome Virus (WSSV) Genome Shrinkage during Spread in Asia

Mark P. Zwart, Bui Thi Minh Dieu, Lia Hemerik, Just M. Vlak

published 14 Oct 2010

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From Grazing Resistance to Pathogenesis: The Coincidental Evolution of Virulence Factors

Sandrine Adiba, Clément Nizak, Minus van Baalen, Erick Denamur, Frantz Depaulis

published 11 Aug 2010

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