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Microbial evolution

A Computational-Experimental Approach Identifies Mutations That Enhance Surface Expression of an Oseltamivir-Resistant Influenza Neuraminidase

Jesse D. Bloom, Jagannath S. Nayak, David Baltimore

published 20 Jul 2011

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Resistance to the CCR5 Inhibitor 5P12-RANTES Requires a Difficult Evolution from CCR5 to CXCR4 Coreceptor Use

Rebecca Nedellec, Mia Coetzer, Michael M. Lederman, Robin E. Offord, Oliver Hartley, Donald E. Mosier

published 08 Jul 2011

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Increased Sensitivity to Broadly Neutralizing Antibodies of End-Stage Disease R5 HIV-1 Correlates with Evolution in Env Glycosylation and Charge

Marie Borggren, Johanna Repits, Jasminka Sterjovski, Hannes Uchtenhagen, Melissa J. Churchill, Anders Karlsson, Jan Albert, Adnane Achour, Paul R. Gorry, Eva Maria Fenyö, Marianne Jansson

published 16 Jun 2011

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Novel Arenavirus Sequences in Hylomyscus sp. and Mus (Nannomys) setulosus from Côte d'Ivoire: Implications for Evolution of Arenaviruses in Africa

David Coulibaly-N'Golo, Bernard Allali, Stéphane K. Kouassi, Elisabeth Fichet-Calvet, Beate Becker-Ziaja, Toni Rieger, Stephan Ölschläger, Hernri Dosso, Christiane Denys, Jan ter Meulen, Chantal Akoua-Koffi, Stephan Günther

published 09 Jun 2011

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Ancient Microbes from Halite Fluid Inclusions: Optimized Surface Sterilization and DNA Extraction

Krithivasan Sankaranarayanan, Michael N. Timofeeff, Rita Spathis, Tim K. Lowenstein, J. Koji Lum

published 09 Jun 2011

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Human Endogenous Retrovirus K106 (HERV-K106) Was Infectious after the Emergence of Anatomically Modern Humans

Aashish R. Jha, Douglas F. Nixon, Michael G. Rosenberg, Jeffrey N. Martin, Steven G. Deeks, Richard R. Hudson, Keith E. Garrison, Satish K. Pillai

published 25 May 2011

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Variation in the Analysis of Positively Selected Sites Using Nonsynonymous/Synonymous Rate Ratios: An Example Using Influenza Virus

Jiming Chen, Yingxue Sun

published 24 May 2011

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Evolutionary Time-Scale of the Begomoviruses: Evidence from Integrated Sequences in the Nicotiana Genome

Pierre Lefeuvre, Gordon W. Harkins, Jean-Michel Lett, Rob W. Briddon, Mark W. Chase, Benoit Moury, Darren P. Martin

published 16 May 2011

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Change of Positive Selection Pressure on HIV-1 Envelope Gene Inferred by Early and Recent Samples

Izumi Yoshida, Wataru Sugiura, Junko Shibata, Fengrong Ren, Ziheng Yang, Hiroshi Tanaka

published 19 Apr 2011

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Rapid Estimation of Binding Activity of Influenza Virus Hemagglutinin to Human and Avian Receptors

Yang Cao, Xiaoying Koh, Libo Dong, Xiangjun Du, Aiping Wu, Xilai Ding, Hongyu Deng, Yuelong Shu, Jianzhu Chen, Taijiao Jiang

published 13 Apr 2011

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Development and Validation of Decision Rules to Guide Frequency of Monitoring CD4 Cell Count in HIV-1 Infection before Starting Antiretroviral Therapy

Thierry Buclin, Amalio Telenti, Rafael Perera, Chantal Csajka, Hansjakob Furrer, Jeffrey K. Aronson, Paul P. Glasziou

published 08 Apr 2011

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Fitness Ranking of Individual Mutants Drives Patterns of Epistatic Interactions in HIV-1

Javier P. Martínez, Gennady Bocharov, Anna Ignatovich, Jochen Reiter, Matthias T. Dittmar, Simon Wain-Hobson, Andreas Meyerhans

published 31 Mar 2011

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Spreading Patterns of the Influenza A (H1N1) Pandemic

Sergio de Picoli Junior, Jorge Juarez Vieira Teixeira, Haroldo Valentin Ribeiro, Luis Carlos Malacarne, Ricardo Paupitz Barbosa dos Santos, Renio dos Santos Mendes

published 31 Mar 2011

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