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Microbial evolution

FREQ-Seq: A Rapid, Cost-Effective, Sequencing-Based Method to Determine Allele Frequencies Directly from Mixed Populations

Lon M. Chubiz, Ming-Chun Lee, Nigel F. Delaney, Christopher J. Marx

published 31 Oct 2012

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Polymorphisms in the CYP2E1 and GSTM1 Genes as Possible Protection Factors for Leprosy Patients

Pablo Pinto, Claudio Guedes Salgado, Ney Santos, Dayse O. Alencar, Sidney Santos, Mara H. Hutz, Ândrea Ribeiro-dos-Santos

published 15 Oct 2012

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Phylogenetic and Evolutionary History of Influenza B Viruses, which Caused a Large Epidemic in 2011–2012, Taiwan

Ji-Rong Yang, Yuan-Pin Huang, Feng-Yee Chang, Li-Ching Hsu, Yu-Cheng Lin, Hsiang-Yi Huang, Fu-Ting Wu, Ho-Sheng Wu, Ming-Tsan Liu

published 12 Oct 2012

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Experimental Evolution of a Bacteriophage Virus Reveals the Trajectory of Adaptation across a Fecundity/Longevity Trade-Off

Richard H. Heineman, Sam P. Brown

published 12 Oct 2012

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Genome Sequencing and Phylogenetic Analysis of 39 Human Parainfluenza Virus Type 1 Strains Isolated from 1997–2010

Eric T. Beck, Jie He, Martha I. Nelson, Michael E. Bose, Jiang Fan, Swati Kumar, Kelly J. Henrickson

published 27 Sep 2012

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Prolonged and Substantial Discordance in Prevalence of Raltegravir-Resistant HIV-1 in Plasma versus PBMC Samples Revealed by 454 “Deep” Sequencing

Guinevere Q. Lee, Luke C. Swenson, Art F. Y. Poon, Jeffrey N. Martin, Hiroyu Hatano, Steven G. Deeks, P. Richard Harrigan

published 26 Sep 2012

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Amino Acids Transitioning of 2009 H1N1pdm in Taiwan from 2009 to 2011

Guang-Wu Chen, Kuo-Chien Tsao, Chung-Guei Huang, Yu-Nong Gong, Shih-Cheng Chang, Yi-Chun Liu, Hsiao-Han Wu, Shu-Li Yang, Tzou-Yien Lin, Yhu-Chering Huang, Shin-Ru Shih

published 24 Sep 2012

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Phylogenetic Properties of RNA Viruses

Simone Pompei, Vittorio Loreto, Francesca Tria

published 20 Sep 2012

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Human Immunodeficiency Virus Type-1 (HIV-1) Continues to Evolve in Presence of Broadly Neutralizing Antibodies More than Ten Years after Infection

Antoine Chaillon, Martine Braibant, Stéphane Hué, Samia Bencharif, David Enard, Alain Moreau, Assia Samri, Henri Agut, Francis Barin

published 30 Aug 2012

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Molecular Evolutionary Analysis of pH1N1 2009 Influenza Virus in Reunion Island, South West Indian Ocean Region: A Cohort Study

Hervé Pascalis, Sarah Temmam, David A. Wilkinson, Najla Dsouli, Magali Turpin, Xavier de Lamballerie, Koussay Dellagi

published 27 Aug 2012

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Computational Identification of Novel Amino-Acid Interactions in HIV Gag via Correlated Evolution

Olga V. Kalinina, Heike Oberwinkler, Bärbel Glass, Hans-Georg Kräusslich, Robert B. Russell, John A. G. Briggs

published 03 Aug 2012

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Discovery of Novel dsRNA Viral Sequences by In Silico Cloning and Implications for Viral Diversity, Host Range and Evolution

Huiquan Liu, Yanping Fu, Jiatao Xie, Jiasen Cheng, Said A. Ghabrial, Guoqing Li, Xianhong Yi, Daohong Jiang

published 27 Jul 2012

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Development of Elvitegravir Resistance and Linkage of Integrase Inhibitor Mutations with Protease and Reverse Transcriptase Resistance Mutations

Mark A. Winters, Robert M. Lloyd Jr., Robert W. Shafer, Michael J. Kozal, Michael D. Miller, Mark Holodniy

published 18 Jul 2012

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