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Microbial evolution

FREQ-Seq: A Rapid, Cost-Effective, Sequencing-Based Method to Determine Allele Frequencies Directly from Mixed Populations

Lon M. Chubiz, Ming-Chun Lee, Nigel F. Delaney, Christopher J. Marx

Polymorphisms in the CYP2E1 and GSTM1 Genes as Possible Protection Factors for Leprosy Patients

Pablo Pinto, Claudio Guedes Salgado, [ ... ], Ândrea Ribeiro-dos-Santos

Phylogenetic and Evolutionary History of Influenza B Viruses, which Caused a Large Epidemic in 2011–2012, Taiwan

Ji-Rong Yang, Yuan-Pin Huang, [ ... ], Ming-Tsan Liu

Experimental Evolution of a Bacteriophage Virus Reveals the Trajectory of Adaptation across a Fecundity/Longevity Trade-Off

Richard H. Heineman, Sam P. Brown

Genome Sequencing and Phylogenetic Analysis of 39 Human Parainfluenza Virus Type 1 Strains Isolated from 1997–2010

Eric T. Beck, Jie He, [ ... ], Kelly J. Henrickson

Prolonged and Substantial Discordance in Prevalence of Raltegravir-Resistant HIV-1 in Plasma versus PBMC Samples Revealed by 454 “Deep” Sequencing

Guinevere Q. Lee, Luke C. Swenson, [ ... ], P. Richard Harrigan

Amino Acids Transitioning of 2009 H1N1pdm in Taiwan from 2009 to 2011

Guang-Wu Chen, Kuo-Chien Tsao, [ ... ], Shin-Ru Shih

Phylogenetic Properties of RNA Viruses

Simone Pompei, Vittorio Loreto, Francesca Tria

Human Immunodeficiency Virus Type-1 (HIV-1) Continues to Evolve in Presence of Broadly Neutralizing Antibodies More than Ten Years after Infection

Antoine Chaillon, Martine Braibant, [ ... ], Francis Barin

Molecular Evolutionary Analysis of pH1N1 2009 Influenza Virus in Reunion Island, South West Indian Ocean Region: A Cohort Study

Hervé Pascalis, Sarah Temmam, [ ... ], Koussay Dellagi

Computational Identification of Novel Amino-Acid Interactions in HIV Gag via Correlated Evolution

Olga V. Kalinina, Heike Oberwinkler, [ ... ], John A. G. Briggs

Discovery of Novel dsRNA Viral Sequences by In Silico Cloning and Implications for Viral Diversity, Host Range and Evolution

Huiquan Liu, Yanping Fu, [ ... ], Daohong Jiang

Development of Elvitegravir Resistance and Linkage of Integrase Inhibitor Mutations with Protease and Reverse Transcriptase Resistance Mutations

Mark A. Winters, Robert M. Lloyd Jr., [ ... ], Mark Holodniy

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