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Microbial evolution

High Frequency of Transmitted HIV-1 Gag HLA Class I-Driven Immune Escape Variants but Minimal Immune Selection over the First Year of Clade C Infection

Kamini Gounder, Nagavelli Padayachi, Jaclyn K. Mann, Mopo Radebe, Mammekwa Mokgoro, Mary van der Stok, Lungile Mkhize, Zenele Mncube, Manjeetha Jaggernath, Tarylee Reddy, Bruce D. Walker, Thumbi Ndung’u

published 17 Mar 2015

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Large-Scale Evolutionary Analyses on SecB Subunits of Bacterial Sec System

Shaomin Yan, Guang Wu

published 16 Mar 2015

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New Insights into Flavivirus Evolution, Taxonomy and Biogeographic History, Extended by Analysis of Canonical and Alternative Coding Sequences

Gregory Moureau, Shelley Cook, Philippe Lemey, Antoine Nougairede, Naomi L. Forrester, Maxim Khasnatinov, Remi N. Charrel, Andrew E. Firth, Ernest A. Gould, Xavier de Lamballerie

published 26 Feb 2015

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Programmed Evolution for Optimization of Orthogonal Metabolic Output in Bacteria

Todd T. Eckdahl, A. Malcolm Campbell, Laurie J. Heyer, Jeffrey L. Poet, David N. Blauch, Nicole L. Snyder, Dustin T. Atchley, Erich J. Baker, Micah Brown, Elizabeth C. Brunner, Sean A. Callen, Jesse S. Campbell, Caleb J. Carr, David R. Carr, Spencer A. Chadinha, Grace I. Chester, Josh Chester, Ben R. Clarkson, Kelly E. Cochran, Shannon E. Doherty, Catherine Doyle, Sarah Dwyer, Linnea M. Edlin, Rebecca A. Evans, Taylor Fluharty, Janna Frederick, Jonah Galeota-Sprung, Betsy L. Gammon, Brandon Grieshaber, Jessica Gronniger, Katelyn Gutteridge, Joel Henningsen, Bradley Isom, Hannah L. Itell, Erica C. Keffeler, Andrew J. Lantz, Jonathan N. Lim, Erin P. McGuire, Alexander K. Moore, Jerrad Morton, Meredith Nakano, Sara A. Pearson, Virginia Perkins, Phoebe Parrish, Claire E. Pierson, Sachith Polpityaarachchige, Michael J. Quaney, Abagael Slattery, Kathryn E. Smith, Jackson Spell, Morgan Spencer, Telavive Taye, Kamay Trueblood, Caroline J. Vrana, E. Tucker Whitesides

published 25 Feb 2015

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A Role for Tn6029 in the Evolution of the Complex Antibiotic Resistance Gene Loci in Genomic Island 3 in Enteroaggregative Hemorrhagic Escherichia coli O104:H4

Piklu Roy Chowdhury, Ian G. Charles, Steven P. Djordjevic

published 12 Feb 2015

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Comparative Genomic and Phylogenetic Analyses of Gammaproteobacterial glg Genes Traced the Origin of the Escherichia coli Glycogen glgBXCAP Operon to the Last Common Ancestor of the Sister Orders Enterobacteriales and Pasteurellales

Goizeder Almagro, Alejandro M. Viale, Manuel Montero, Mehdi Rahimpour, Francisco José Muñoz, Edurne Baroja-Fernández, Abdellatif Bahaji, Manuel Zúñiga, Fernando González-Candelas, Javier Pozueta-Romero

published 21 Jan 2015

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Evidence That the Heterogeneity of a T4 Population Is the Result of Heritable Traits

Zachary J. Storms, Dominic Sauvageau

published 31 Dec 2014

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Enteroaggregative Escherichia coli Have Evolved Independently as Distinct Complexes within the E. coli Population with Varying Ability to Cause Disease

Marie Anne Chattaway, Claire Jenkins, Dunstan Rajendram, Alejandro Cravioto, Kaisar Ali Talukder, Tim Dallman, Anthony Underwood, Steve Platt, Iruka N. Okeke, John Wain

published 21 Nov 2014

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In Vitro Evolution and Affinity-Maturation with Coliphage Qβ Display

Claudia Skamel, Stephen G. Aller, Alain Bopda Waffo

published 13 Nov 2014

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Clinical Application of Estimating Hepatitis B Virus Quasispecies Complexity by Massive Sequencing: Correlation between Natural Evolution and On-Treatment Evolution

Maria Homs, Andrea Caballero, Josep Gregori, David Tabernero, Josep Quer, Leonardo Nieto, Rafael Esteban, Maria Buti, Francisco Rodriguez-Frias

published 13 Nov 2014

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Emergence, Evolution and Scaling of Online Social Networks

Le-Zhi Wang, Zi-Gang Huang, Zhi-Hai Rong, Xiao-Fan Wang, Ying-Cheng Lai

published 07 Nov 2014

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Systematic CpT (ApG) Depletion and CpG Excess Are Unique Genomic Signatures of Large DNA Viruses Infecting Invertebrates

Mohita Upadhyay, Neha Sharma, Perumal Vivekanandan

published 04 Nov 2014

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Coincidental Loss of Bacterial Virulence in Multi-Enemy Microbial Communities

Ji Zhang, Tarmo Ketola, Anni-Maria Örmälä-Odegrip, Johanna Mappes, Jouni Laakso

published 03 Nov 2014

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