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Microbial evolution

Investigating the evolutionary dynamics and mutational pattern of SARS-CoV-2 spike gene on selected SARS-CoV-2 variants

Bachir Balech, Alessandra Lo Presti, Claudia Telegrafo, Lucia Maisto, Emanuela Giombini, Angela Di Martino, Luigina Ambrosio, Apollonia Tullo, Paola Stefanelli, on behalf of the Italian Genomic Laboratory Network

published 21 Oct 2025

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SARS-CoV-2 sequencing artifacts associated with targeted PCR enrichment and read mapping

Kirsten Maren Ellegaard, Vithiagaran Gunalan, Raphael Sieber, Sharmin Jamshid Baig, Nicolai Balle Larsen, Marc Bennedbæk, Jonas Bybjerg-Grauholm, Leandro Andrés Escobar-Herrera, Tobias Gress, Theis Hass Thorsen, Anders Krusager, Gitte Nygaard Aasbjerg, Nour Saad Al-Tamimi, Casper Westergaard, Christina Wiid Svarrer, Morten Rasmussen, Marc Stegger

published 16 Oct 2025

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Identification and genetic characterization of Jingmen tick virus from ticks sampled in select regions of Kenya; 2022–2024

Lydia Mwasi, Samoel Khamadi, Wallace Bulimo, Johnson Kinyua, Santos Yalwala, Luis Pow Sang, Haynes Robert, Gerald G. Kellar, John Eads, Fredrick Eyase

published 13 Oct 2025

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Passage of human-origin influenza A virus in swine tracheal epithelial cells selects for adaptive mutations in the hemagglutinin gene

Jongsuk Mo, Lucas M. Ferreri, Ginger Geiger, Daniel R. Perez, Daniela S. Rajao

published 13 Aug 2025

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Deciphering the genetic landscape of tomato leaf curl New Delhi virus: Dynamic and region-specific diversity revealed by comprehensive sequence analyses

Zafar Iqbal, Adil Alshoaibi, Sallah Ahmad Al Hashedi, Muhammad Naeem Sattar, Khaled Muhammad Amin Ramadan

published 17 Jul 2025

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Variant evolution graph: Can we infer how SARS-CoV-2 variants are evolving?

Badhan Das, Lenwood S. Heath

published 09 Jun 2025

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Evolution and classification of Ser/Thr phosphatase PP2C family in bacteria: Sequence conservation, structures, domain distribution

Hang Li, Rui Li, Haoyue Yu, Youhuan Zhang, Hong Feng

published 19 May 2025

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Whole genome sequencing and molecular detection of potato virus X in Bangladesh

Md. Shafiqul Islam, Md. Akash Ahammed, Fahmida Akhter, Mosaddiqur Rahman, Md. Mosharraf Hossain Molla

published 08 May 2025

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Transmission matrix parameter estimation of COVID-19 evolution with age compartments using ensemble-based data assimilation

Santiago Rosa, Manuel A. Pulido, Juan J. Ruiz, Tadeo J. Cocucci

published 28 Apr 2025

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Increased preference for lysine over arginine in spike proteins of SARS-CoV-2 BA.2.86 variant and its daughter lineages

Anže Božič, Rudolf Podgornik

published 07 Apr 2025

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Microevolution and phylogenomic study of Respiratory Syncytial Virus type A

Ashfaq Ahmad, Sidra Majaz, Aamir Saeed, Shumaila Noreen, Muhammad Abbas, Bilal Khan, Hamid Ur Rahman, Faisal Nouroz, Yingqiu Xie, Abdur Rashid, Atta Ur Rehman

published 25 Feb 2025

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Whole-genome sequence analysis of SFTS bunyavirus in Huzhou, China

Deshun Xu, Lei Ji, Xiaofang Wu, Liping Chen

published 11 Feb 2025

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Trait and plasticity evolution under competition and mutualism in evolving pairwise yeast communities

ShengPei Wang, Renuka Agarwal, Kari A. Segraves, David M. Althoff

published 15 Jan 2025

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