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Microbial evolution

Trade-Offs of Escherichia coli Adaptation to an Intracellular Lifestyle in Macrophages

M. Azevedo, A. Sousa, J. Moura de Sousa, J. A. Thompson, J. T. Proença, I. Gordo

published 11 Jan 2016

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Analysis of Enterovirus 68 Strains from the 2014 North American Outbreak Reveals a New Clade, Indicating Viral Evolution

Juan Du, Baisong Zheng, Wenwen Zheng, Peng Li, Jian Kang, Jingwei Hou, Richard Markham, Ke Zhao, Xiao-Fang Yu

published 02 Dec 2015

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Time Clustered Sampling Can Inflate the Inferred Substitution Rate in Foot-And-Mouth Disease Virus Analyses

Casper-Emil T. Pedersen, Peter Frandsen, Sabenzia N. Wekesa, Rasmus Heller, Abraham K. Sangula, Jemma Wadsworth, Nick J. Knowles, Vincent B. Muwanika, Hans R. Siegismund

published 02 Dec 2015

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Heterogeneous Evolution of HIV-1 CRF01_AE in Men Who Have Sex with Men (MSM) and Other Populations in China

Xiaorong Peng, Haibo Wu, Xiuming Peng, Changzhong Jin, Nanping Wu

published 01 Dec 2015

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Replaying Evolution to Test the Cause of Extinction of One Ecotype in an Experimentally Evolved Population

Caroline B. Turner, Zachary D. Blount, Richard E. Lenski

published 18 Nov 2015

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Long-Term Follow-Up of Proteinuria and Estimated Glomerular Filtration Rate in HIV-Infected Patients with Tubular Proteinuria

Hélène Peyriere, Amandine Cournil, Marie-Laure Casanova, Stéphanie Badiou, Jean-Paul Cristol, Jacques Reynes

published 16 Nov 2015

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Depletion of CpG Dinucleotides in Papillomaviruses and Polyomaviruses: A Role for Divergent Evolutionary Pressures

Mohita Upadhyay, Perumal Vivekanandan

published 06 Nov 2015

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Detecting Hotspot Information Using Multi-Attribute Based Topic Model

Jing Wang, Li Li, Feng Tan, Ying Zhu, Weisi Feng

published 23 Oct 2015

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Hepatitis B Virus (HBV) Variants in Untreated and Tenofovir Treated Chronic Hepatitis B (CHB) Patients during Pregnancy and Post-Partum Follow-Up

Boris Virine, Carla Osiowy, Shan Gao, Tong Wang, Eliana Castillo, Steven R. Martin, Samuel S. Lee, Kimberley Simmonds, Guido van Marle, Carla S. Coffin

published 16 Oct 2015

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Assessing Biases in the Evaluation of Classification Assays for HIV Infection Recency

Oscar Patterson-Lomba, Julia W. Wu, Marcello Pagano

published 05 Oct 2015

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Statistical Mechanics and Thermodynamics of Viral Evolution

Barbara A. Jones, Justin Lessler, Simone Bianco, James H. Kaufman

published 30 Sep 2015

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The Complete Genome Phylogeny of Geographically Distinct Dengue Virus Serotype 2 Isolates (1944-2013) Supports Further Groupings within the Cosmopolitan Genotype

Akhtar Ali, Ijaz Ali

published 28 Sep 2015

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Reconstruction of the Evolutionary Dynamics of A(H3N2) Influenza Viruses Circulating in Italy from 2004 to 2012

Erika Ebranati, Elena Pariani, Antonio Piralla, Monica Gozalo-Margüello, Carla Veo, Laura Bubba, Antonella Amendola, Massimo Ciccozzi, Massimo Galli, Alessandro Remo Zanetti, Fausto Baldanti, Gianguglielmo Zehender

published 02 Sep 2015

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