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Microbial ecosystems

Assessing microbial diversity in open-pit mining: Metabarcoding analysis of soil and pit microbiota across operational and restoration stages

Priscila Heredia Reto, Rosita Castillo Rogel, Gabriela Palomino Lucano, Jean Louis Falen, Ricardo David Avellan Laguno, Karina Zapata Vidaurre, Marisol Saavedra Febre, Gabriel Reyes Calle, Juan Zingg Rosell, Jimmy Lopez Perez, José Morán Rosillo, Eric Mialhe, Benoit Diringer

published 07 Apr 2025

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Exploring soil bacterial and fungal communities in Colombian terrestrial ecosystems modulated by altitude-influenced factors

Wendy Lorena Reyes-Ardila, Glever Alexander Vélez-Martínez, Juan Diego Duque-Zapata, Paula Andrea Rugeles-Silva, Jaime Eduardo Muñoz Flórez, Diana López-Álvarez

published 12 Dec 2024

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Seasonal effects of long-term warming on ecosystem function and bacterial diversity

Melissa S. Shinfuku, Luiz A. Domeignoz-Horta, Mallory J. Choudoir, Serita D. Frey, Megan F. Mitchell, Ravi Ranjan, Kristen M. DeAngelis

published 24 Oct 2024

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Prescribed fire regimes influence responses of fungal and bacterial communities on new litter substrates in a brackish tidal marsh

Viet Q. Dao, Crystal N. Johnson, William J. Platt

published 01 Oct 2024

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Do restoration strategies in mangroves recover microbial diversity? A case study in the Yucatan peninsula

Daniel Esguerra-Rodríguez, Arit De León-Lorenzana, Claudia Teutli, Alejandra Prieto-Davó, José Q. García-Maldonado, Jorge Herrera-Silveira, Luisa I. Falcón

published 16 Aug 2024

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Integrating microbial abundance time series with fermentation dynamics of the rumen microbiome via mathematical modelling

Mohsen Davoudkhani, Francesco Rubino, Christopher J. Creevey, Seppo Ahvenjärvi, Ali R. Bayat, Ilma Tapio, Alejandro Belanche, Rafael Muñoz-Tamayo

published 20 Mar 2024

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Soil bacterial assemblage responses to wildfire in low elevation southern California habitats

Elena Cox, André R. O. Cavalcanti, Edward J. Crane III, Wallace M. Meyer III

published 08 Apr 2022

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Clinical utility of subgingival plaque-specific bacteria in salivary microbiota for detecting periodontitis

Jiale Ma, Shinya Kageyama, Toru Takeshita, Yukie Shibata, Michiko Furuta, Mikari Asakawa, Yoshihisa Yamashita

published 25 Jun 2021

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Perturbation of the human gastrointestinal tract microbial ecosystem by oral drugs to treat chronic disease results in a spectrum of individual specific patterns of extinction and persistence of dominant microbial strains

Hyunmin Koo, Casey D. Morrow

published 01 Dec 2020

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Environmental control on the distribution of metabolic strategies of benthic microbial mats in Lake Fryxell, Antarctica

Megan L. Dillon, Ian Hawes, Anne D. Jungblut, Tyler J. Mackey, Jonathan A. Eisen, Peter T. Doran, Dawn Y. Sumner

published 13 Apr 2020

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The Community Simulator: A Python package for microbial ecology

Robert Marsland, Wenping Cui, Joshua Goldford, Pankaj Mehta

published 24 Mar 2020

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Effects of initial microbial biomass abundance on respiration during pine litter decomposition

Michaeline B. N. Albright, Andreas Runde, Deanna Lopez, Jason Gans, Sanna Sevanto, Dominic Woolf, John Dunbar

published 14 Feb 2020

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Enzyme stoichiometry indicates the variation of microbial nutrient requirements at different soil depths in subtropical forests

Jiebao Liu, Ji Chen, Guangshui Chen, Jianfen Guo, Yiqing Li

published 04 Feb 2020

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