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Microbial ecology

Microbiome of the wasp Vespula pensylvanica in native and invasive populations, and associations with Moku virus

Jason A. Rothman, Kevin J. Loope, Quinn S. McFrederick, Erin E. Wilson Rankin

published 29 Jul 2021

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Comparison of wild rice (Oryza longistaminata) tissues identifies rhizome-specific bacterial and archaeal endophytic microbiomes communities and network structures

Xiaojue Peng, Jian Xie, Wenzhuo Li, Hongwei Xie, Yaohui Cai, Xia Ding

published 08 Feb 2021

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Consistent patterns in 16S and 18S microbial diversity from the shells of the common and widespread red-eared slider turtle (Trachemys scripta)

Matthew Parks, Cameron Kedy, Casey Skalla

published 28 Dec 2020

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A multi-omics approach to solving problems in plant disease ecology

Sharifa G. Crandall, Kaitlin M. Gold, María del Mar Jiménez-Gasco, Camila C. Filgueiras, Denis S. Willett

published 22 Sep 2020

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Replicable simulation of distal hot water premise plumbing using convectively-mixed pipe reactors

M. Storme Spencer, Abraham C. Cullom, William J. Rhoads, Amy Pruden, Marc A. Edwards

published 16 Sep 2020

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Patient propagules: Do soil archives preserve the legacy of fungal and prokaryotic communities?

Gian Maria Niccolò Benucci, Bryan Rennick, Gregory Bonito

published 11 Aug 2020

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The Community Simulator: A Python package for microbial ecology

Robert Marsland, Wenping Cui, Joshua Goldford, Pankaj Mehta

published 24 Mar 2020

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Changes in key vaginal bacteria among postpartum African women initiating intramuscular depot-medroxyprogesterone acetate

Bridget M. Whitney, Brandon L. Guthrie, Sujatha Srinivasan, Kenneth Tapia, Eric Munene Muriuki, Bhavna H. Chohan, Jacqueline M. Wallis, Congzhou Liu, R. Scott McClelland, David N. Fredricks, Alison C. Roxby

published 05 Mar 2020

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Duckweed hosts a taxonomically similar bacterial assemblage as the terrestrial leaf microbiome

Kenneth Acosta, Jenny Xu, Sarah Gilbert, Elizabeth Denison, Thomas Brinkman, Sarah Lebeis, Eric Lam

published 06 Feb 2020

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The gut bacterial communities across six grasshopper species from a coastal tallgrass prairie

Melani Muratore, Chelse Prather, Yvonne Sun

published 30 Jan 2020

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Comparing bioinformatic pipelines for microbial 16S rRNA amplicon sequencing

Andrei Prodan, Valentina Tremaroli, Harald Brolin, Aeilko H. Zwinderman, Max Nieuwdorp, Evgeni Levin

published 16 Jan 2020

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Biomarker discovery in inflammatory bowel diseases using network-based feature selection

Mostafa Abbas, John Matta, Thanh Le, Halima Bensmail, Tayo Obafemi-Ajayi, Vasant Honavar, Yasser EL-Manzalawy

published 22 Nov 2019

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Machine learning to predict microbial community functions: An analysis of dissolved organic carbon from litter decomposition

Jaron Thompson, Renee Johansen, John Dunbar, Brian Munsky

published 01 Jul 2019

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