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Methylation

Tissue of origin characterization of cell free DNA in seminal plasma: Implications for new liquid biopsies

Stephanie Huang, James C. Hart, James F. Smith, Shellie Bench, Laura Rivas Yepes, Bailey Griscom, Kim M. Clark-Langone

published 31 Mar 2025

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Deciphering the structural consequences of R83 and R152 methylation on DNA polymerase β using molecular modeling

Amit Srivastava, Haitham Idriss, Gobind Das, Sufian Abedrabbo, Mohd Sahir Shamsir, Dirar Homouz

published 12 Mar 2025

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Zika virus modulates arthropod histone methylation for its survival in mosquito cells

Telvin Harrell, Swarnendu Basak, Hameeda Sultana, Girish Neelakanta

published 13 Feb 2025

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Genome-wide DNA methylation and transcriptome sequencing analyses of lens tissue in an age-related mouse cataract model

Yuzhu Hu, Dongmei Su, Yue Zhang, Yanjiang Fu, Sijia Li, Xiaoya Chen, Xiao Zhang, Shunfei Zheng, Xu Ma, Shanshan Hu

published 30 Jan 2025

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Hypomethylation of IL6ST promotes development of endometriosis by activating JAK2/STAT3 signaling pathway

Yue Hu, Hailong Chen, Lijuan Jin, Xiumei Chi, Jian Zhao, Qinying Cao

published 16 Jan 2025

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Hypermethylation at 45S rDNA promoter in cancers

Trang Thi Quynh Tran, Trang Hien Do, Tung The Pham, Phương Thi Thu Luu, Oanh Minh Pham, Uyen Quynh Nguyen, Linh Dieu Vuong, Quang Ngoc Nguyen, Tuan Van Mai, Son Van Ho, Than Thi Nguyen, Lan Thi Thuong Vo

published 07 Jan 2025

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An appropriate DNA input for bisulfite conversion reveals LINE-1 and Alu hypermethylation in tissues and circulating cell-free DNA from cancers

Trang Thi Quynh Tran, Tung The Pham, Than Thi Nguyen, Trang Hien Do, Phuong Thi Thu Luu, Uyen Quynh Nguyen, Linh Dieu Vuong, Quang Ngoc Nguyen, Son Van Ho, Hang Viet Dao, Tong Van Hoang, Lan Thi Thuong Vo

published 30 Dec 2024

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DMRIntTk: Integrating different DMR sets based on density peak clustering

Wenjin Zhang, Wenlong Jie, Wanxin Cui, Guihua Duan, You Zou, Xiaoqing Peng

published 23 Dec 2024

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A novel family of beta mixture models for the differential analysis of DNA methylation data: An application to prostate cancer

Koyel Majumdar, Romina Silva, Antoinette Sabrina Perry, Ronald William Watson, Andrea Rau, Florence Jaffrezic, Thomas Brendan Murphy, Isobel Claire Gormley

published 11 Dec 2024

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iDNA-ITLM: An interpretable and transferable learning model for identifying DNA methylation

Xia Yu, Cui Yani, Zhichao Wang, Haixia Long, Rao Zeng, Xiling Liu, Bilal Anas, Jia Ren

published 31 Oct 2024

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A study of the clinical significance of mSEPT9 in monitoring recurrence and prognosis in patients with surgically treated colorectal cancer

Rong Li, Jiaojiao Chen, Xin Shen, Yanping Lin, Jiadai Tang, Guangrui Xiong, Ke Zhang, Mengying Xiang, Lin Xie, Fengdi Hu

published 28 Oct 2024

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Cell-type specific methylation changes in the newborn child associated to obstetric pain relief

Charles J. Tran, Thomas L. Campbell, Ralen H. Johnson, Lin Y. Xie, Christina M. Hultman, Edwin J. C. G. van den Oord, Karolina A. Aberg

published 19 Sep 2024

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Exploring the interplay between colorectal cancer subtypes genomic variants and cellular morphology: A deep-learning approach

Hadar Hezi, Daniel Shats, Daniel Gurevich, Yosef E. Maruvka, Moti Freiman

published 10 Sep 2024

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