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Methylation

Simultaneous quantification of rDNA methylation and copy number: Constraints to natural variation in humans and cell lines

Stephen Flint Smith, Bernardo Lemos

published 13 Nov 2025

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Molecular triage on HPV-positive samples in a cervical screening setting

Gabriella Lillsunde Larsson, Jessica Carlsson, Gisela Helenius, Lovisa Bergengren

published 13 Oct 2025

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The role of SLC2A1 in lung adenocarcinoma: From tumorigenesis to patient survival

Zijun Xiao, Qinqin Long, Jiaxing Liao, Fengdie Huang, Lusheng Liao, Mingyou Dong

published 18 Aug 2025

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DNA methylation differences stratified by normalized fetal/placental weight ratios suggest neurodevelopmental deficits in neonates with congenital heart disease

Marin Jacobwitz, Michael Xie, Jamie Catalano, Ingo Helbig, J. William Gaynor, Nancy Burnham, Rebecca L. Linn, Juliana Gebb, Mark W. Russell, Hakon Hakonarson, Barbara H. Chaiyachati, Ana G. Cristancho

published 06 Aug 2025

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A comparison of DNA methylation detection between HiFi sequencing and whole genome bisulfite sequencing in monozygotic twins with Down syndrome

Kanyanee Promsawan, Chalurmpon Srichomthong, Monnat Pongpanich, Vorasuk Shotelersuk

published 05 Aug 2025

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The porphyran degradation system is complete, phylogenetically and geographically diverse across the gut microbiota of East Asian populations

Laure Ségurel, Thirumalai Selvi Ulaganathan, Sophie Mathieu, Mélanie Loiodice, Laurent Poulet, Sophie Drouillard, Miroslaw Cygler, William Helbert

published 01 Aug 2025

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Whole genome DNA methylation patterns in tissue and cfDNA associated with fibrosis reflect the complex signature of MASLD

Jongseong Ahn, Soyeon Kim, Jae Yoon Jeong, Sunghoon Heo, Kyung-hee Pyo, Eun-Ae Shin, Wonsik Kim, Jae-Ho Lee, Na Ryung Choi, Han Ah Lee, Hwang-Phill Kim, Sang-Hyun Song, Hwi Young Kim, Tae-You Kim, Jung Weon Lee

published 17 Jul 2025

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Measuring technical variability in illumina DNA methylation microarrays

Anderson A. Butler, Jason J. Kras, Karolina P. Chwalek, Enrique I. Ramos, Isaac J. Bishof, David S. Vogel, Daniel L. Vera

published 11 Jul 2025

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Rationale and study protocol of the MAMELI Cohort study (Mapping the Methylation of repetitive elements to track the Exposome effects on health: the city of Legnano as a Living lab)

Valentina Bollati, Federica Rota, Laura Dioni, Chiara Favero, Simona Iodice, Marta Gallazzi, Andrea Spinazzè, Giacomo Fanti, Davide Campagnolo, Tiago Nardi, Davide Biganzoli, Eva Dariol, Rachele Matsagani, Mirjam Hoxha, Paola Monti, Benedetta Albetti, Letizia Tarantini, Davide Barbuto, Ester Luconi, Giuseppe Marano, Giacomo Biganzoli, Roberta Biciuffi, Patrizia Boracchi, Domenico M. Cavallo, Pilar M. Guerrieri, Fabio Mosca, Stefano Gustincich, Giovanni Sanesi, Luca Ferrari, Michele Carugno, Silvia Fustinoni, Angela Cecilia Pesatori, Luca Pandolfini, Michele Miragoli, Andrea Cattaneo, Elia Biganzoli

published 09 Jul 2025

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Leveraging molecular-QTL co-association to predict novel disease-associated genetic loci using a graph convolutional neural network

Julian Ng-Kee-Kwong, Andrew D. Bretherick

published 10 Jun 2025

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Polypyrimidine tract binding proteins PTBP1 and PTBP2 associate with distinct proteins and have distinct post-translational modifications in neuronal nuclear extract

Michael E. Sullivan, Jacob A. Edberg, Christopher I. Nunez, Herbert L. Axelrod, Niroshika M. Keppetipola

published 04 Jun 2025

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Genome-wide DNA methylation analysis of hippocampal tissue in a murine model of attention deficit-hyperactivity disorder

Rodrigo Vidal, Ignacio Lopez, Gonzalo Ugarte, Darwin Contreras, Ricardo Piña, Felipe Godoy, Carlos Rozas, David Rubio, Carola Mantellero, Luis Constandil, Jorge Escobar, Bernardo Morales

published 04 Jun 2025

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AD-GCN: A novel graph convolutional network integrating multi-omics data for enhanced Alzheimer’s disease diagnosis

Zilu Li, Qingyun Li, Xiaoqing Li, Wei Luo, Haiyan Guo, Chunyan Zhao, Canzhen Yang, Anke Xie, Kai Hu, Yangfan Guo

published 02 Jun 2025

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