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Markov models

Effective Identification of Conserved Pathways in Biological Networks Using Hidden Markov Models

Xiaoning Qian, Byung-Jun Yoon

published 07 Dec 2009

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Examination of Genome Homogeneity in Prokaryotes Using Genomic Signatures

Jon Bohlin, Eystein Skjerve

published 02 Dec 2009

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The Repertoire of Heterotrimeric G Proteins and RGS Proteins in Ciona intestinalis

R. Prasobh, Narayanan Manoj

published 06 Oct 2009

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Highly Sensitive Detection of Individual HEAT and ARM Repeats with HHpred and COACH

Fred Kippert, Dietlind L. Gerloff

published 24 Sep 2009

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Application of a Mathematical Model to Describe the Effects of Chlorpyrifos on Caenorhabditis elegans Development

Windy A. Boyd, Marjolein V. Smith, Grace E. Kissling, Julie R. Rice, Daniel W. Snyder, Christopher J. Portier, Jonathan H. Freedman

published 15 Sep 2009

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A Discrete Time Model for the Analysis of Medium-Throughput C. elegans Growth Data

Marjolein V. Smith, Windy A. Boyd, Grace E. Kissling, Julie R. Rice, Daniel W. Snyder, Christopher J. Portier, Jonathan H. Freedman

published 15 Sep 2009

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Parsing Social Network Survey Data from Hidden Populations Using Stochastic Context-Free Grammars

Art F. Y. Poon, Kimberly C. Brouwer, Steffanie A. Strathdee, Michelle Firestone-Cruz, Remedios M. Lozada, Sergei L. Kosakovsky Pond, Douglas D. Heckathorn, Simon D. W. Frost

published 07 Sep 2009

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A Comparative Proteomic Analysis of the Simple Amino Acid Repeat Distributions in Plasmodia Reveals Lineage Specific Amino Acid Selection

Andrew R. Dalby

published 14 Jul 2009

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An Integrated Approach to Identifying Cis-Regulatory Modules in the Human Genome

Kyoung-Jae Won, Saurabh Agarwal, Li Shen, Robert Shoemaker, Bing Ren, Wei Wang

published 12 May 2009

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Evolutionary Conservation of Orthoretroviral Long Terminal Repeats (LTRs) and ab initio Detection of Single LTRs in Genomic Data

Farid Benachenhou, Patric Jern, Merja Oja, Göran Sperber, Vidar Blikstad, Panu Somervuo, Samuel Kaski, Jonas Blomberg

published 13 Apr 2009

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Pattern-Selection Based Power Analysis and Discrimination of Low- and High-Grade Myelodysplastic Syndromes Study Using SNP Arrays

Xiaorong Yang, Xiaobo Zhou, Wan-Ting Huang, Lingyun Wu, Federico A. Monzon, Chung-Che Chang, Stephen T. C. Wong

published 08 Apr 2009

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Identification and Gene Expression Analysis of a Taxonomically Restricted Cysteine-Rich Protein Family in Reef-Building Corals

Shinichi Sunagawa, Michael K. DeSalvo, Christian R. Voolstra, Alejandro Reyes-Bermudez, Mónica Medina

published 13 Mar 2009

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Dissecting Nucleosome Free Regions by a Segmental Semi-Markov Model

Wei Sun, Wei Xie, Feng Xu, Michael Grunstein, Ker-Chau Li

published 06 Mar 2009

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