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Markov models

Evolutionary Distances in the Twilight Zone—A Rational Kernel Approach

Roland F. Schwarz, William Fletcher, Frank Förster, Benjamin Merget, Matthias Wolf, Jörg Schultz, Florian Markowetz

published 31 Dec 2010

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A Novel HMM-Based Method for Detecting Enriched Transcription Factor Binding Sites Reveals RUNX3 as a Potential Target in Pancreatic Cancer Biology

Liron Levkovitz, Nir Yosef, Marvin C. Gershengorn, Eytan Ruppin, Roded Sharan, Yoram Oron

published 22 Dec 2010

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Feller Processes: The Next Generation in Modeling. Brownian Motion, Lévy Processes and Beyond

Björn Böttcher

published 03 Dec 2010

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Single-Molecule Analysis Reveals the Kinetics and Physiological Relevance of MutL-ssDNA Binding

Jonghyun Park, Yongmoon Jeon, Daekil In, Richard Fishel, Changill Ban, Jong-Bong Lee

published 12 Nov 2010

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HMMSplicer: A Tool for Efficient and Sensitive Discovery of Known and Novel Splice Junctions in RNA-Seq Data

Michelle T. Dimon, Katherine Sorber, Joseph L. DeRisi

published 08 Nov 2010

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Genome-Wide Identification of HrpL-Regulated Genes in the Necrotrophic Phytopathogen Dickeya dadantii 3937

Shihui Yang, Quan Peng, Qiu Zhang, Lifang Zou, Yan Li, Christelle Robert, Leighton Pritchard, Hui Liu, Raymond Hovey, Qi Wang, Paul Birch, Ian K. Toth, Ching-Hong Yang

published 19 Oct 2010

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Pacific Salmon and the Coalescent Effective Population Size

Can Cenik, John Wakeley

published 27 Sep 2010

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A Score of the Ability of a Three-Dimensional Protein Model to Retrieve Its Own Sequence as a Quantitative Measure of Its Quality and Appropriateness

León P. Martínez-Castilla, Rogelio Rodríguez-Sotres

published 07 Sep 2010

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An Economic Evaluation of Home Management of Malaria in Uganda: An Interactive Markov Model

Yoel Lubell, Anne J. Mills, Christopher J. M. Whitty, Sarah G. Staedke

published 27 Aug 2010

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Novel Association Strategy with Copy Number Variation for Identifying New Risk Loci of Human Diseases

Xianfeng Chen, Xinlei Li, Ping Wang, Yang Liu, Zhenguo Zhang, Guoping Zhao, Haiming Xu, Jun Zhu, Xueying Qin, Suchao Chen, Landian Hu, Xiangyin Kong

published 20 Aug 2010

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Mechanical Characterization of One-Headed Myosin-V Using Optical Tweezers

Tomonobu M. Watanabe, Atsuko H. Iwane, Hiroto Tanaka, Mitsuo Ikebe, Toshio Yanagida

published 18 Aug 2010

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Correcting the Bias of Empirical Frequency Parameter Estimators in Codon Models

Sergei Kosakovsky Pond, Wayne Delport, Spencer V. Muse, Konrad Scheffler

published 30 Jul 2010

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Evolution of Cooperation on Stochastic Dynamical Networks

Bin Wu, Da Zhou, Feng Fu, Qingjun Luo, Long Wang, Arne Traulsen

published 30 Jun 2010

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