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Markov models

Prediction of Membrane Transport Proteins and Their Substrate Specificities Using Primary Sequence Information

Nitish K. Mishra, Junil Chang, Patrick X. Zhao

published 26 Jun 2014

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Bayesian Genome Assembly and Assessment by Markov Chain Monte Carlo Sampling

Mark Howison, Felipe Zapata, Erika J. Edwards, Casey W. Dunn

published 26 Jun 2014

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Autoregressive Higher-Order Hidden Markov Models: Exploiting Local Chromosomal Dependencies in the Analysis of Tumor Expression Profiles

Michael Seifert, Khalil Abou-El-Ardat, Betty Friedrich, Barbara Klink, Andreas Deutsch

published 23 Jun 2014

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Quantifying ‘Causality’ in Complex Systems: Understanding Transfer Entropy

Fatimah Abdul Razak, Henrik Jeldtoft Jensen

published 23 Jun 2014

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BioAssemblyModeler (BAM): User-Friendly Homology Modeling of Protein Homo- and Heterooligomers

Maxim V. Shapovalov, Qiang Wang, Qifang Xu, Mark Andrake, Roland L. Dunbrack Jr

published 12 Jun 2014

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Modeling the Spread of Multiple Concurrent Contagions on Networks

Angel Stanoev, Daniel Trpevski, Ljupco Kocarev

published 12 Jun 2014

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Identification of Divergent Protein Domains by Combining HMM-HMM Comparisons and Co-Occurrence Detection

Amel Ghouila, Isabelle Florent, Fatma Zahra Guerfali, Nicolas Terrapon, Dhafer Laouini, Sadok Ben Yahia, Olivier Gascuel, Laurent Bréhélin

published 05 Jun 2014

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HaplotypeCN: Copy Number Haplotype Inference with Hidden Markov Model and Localized Haplotype Clustering

Yen-Jen Lin, Yu-Tin Chen, Shu-Ni Hsu, Chien-Hua Peng, Chuan-Yi Tang, Tzu-Chen Yen, Wen-Ping Hsieh

published 21 May 2014

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Lactoferrin Dampens High-Fructose Corn Syrup-Induced Hepatic Manifestations of the Metabolic Syndrome in a Murine Model

Yi-Chieh Li, Chang-Chi Hsieh

published 09 May 2014

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ComQXPA Quorum Sensing Systems May Not Be Unique to Bacillus subtilis: A Census in Prokaryotic Genomes

Iztok Dogsa, Kumari Sonal Choudhary, Ziva Marsetic, Sanjarbek Hudaiberdiev, Roberto Vera, Sándor Pongor, Ines Mandic-Mulec

published 02 May 2014

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PASTEC: An Automatic Transposable Element Classification Tool

Claire Hoede, Sandie Arnoux, Mark Moisset, Timothée Chaumier, Olivier Inizan, Véronique Jamilloux, Hadi Quesneville

published 02 May 2014

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Dihydroartemisinin-Piperaquine vs. Artemether-Lumefantrine for First-Line Treatment of Uncomplicated Malaria in African Children: A Cost-Effectiveness Analysis

Johannes Pfeil, Steffen Borrmann, Yeşim Tozan

published 18 Apr 2014

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MP3: A Software Tool for the Prediction of Pathogenic Proteins in Genomic and Metagenomic Data

Ankit Gupta, Rohan Kapil, Darshan B. Dhakan, Vineet K. Sharma

published 15 Apr 2014

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