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High throughput sequencing

OTG-snpcaller: An Optimized Pipeline Based on TMAP and GATK for SNP Calling from Ion Torrent Data

Pengyuan Zhu, Lingyu He, Yaqiao Li, Wenpan Huang, Feng Xi, Lin Lin, Qihuan Zhi, Wenwei Zhang, Y. Tom Tang, Chunyu Geng, Zhiyuan Lu, Xun Xu

published 13 May 2014

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Systematic Design of 18S rRNA Gene Primers for Determining Eukaryotic Diversity in Microbial Consortia

Luisa W. Hugerth, Emilie E. L. Muller, Yue O. O. Hu, Laura A. M. Lebrun, Hugo Roume, Daniel Lundin, Paul Wilmes, Anders F. Andersson

published 22 Apr 2014

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A Method Enabling High-Throughput Sequencing of Human Cytomegalovirus Complete Genomes from Clinical Isolates

Steven Sijmons, Kim Thys, Michaël Corthout, Ellen Van Damme, Marnix Van Loock, Stefanie Bollen, Sylvie Baguet, Jeroen Aerssens, Marc Van Ranst, Piet Maes

published 22 Apr 2014

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Performance Comparison between Rapid Sequencing Platforms for Ultra-Low Coverage Sequencing Strategy

Shengpei Chen, Sheng Li, Weiwei Xie, Xuchao Li, Chunlei Zhang, Haojun Jiang, Jing Zheng, Xiaoyu Pan, Hancheng Zheng, Jia Sophie Liu, Yongqiang Deng, Fang Chen, Hui Jiang

published 20 Mar 2014

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Revealing Individual Signatures of Human T Cell CDR3 Sequence Repertoires with Kidera Factors

Michael Epstein, Martino Barenco, Nigel Klein, Michael Hubank, Robin E. Callard

published 29 Jan 2014

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Taxonomic Precision of Different Hypervariable Regions of 16S rRNA Gene and Annotation Methods for Functional Bacterial Groups in Biological Wastewater Treatment

Feng Guo, Feng Ju, Lin Cai, Tong Zhang

published 16 Oct 2013

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Identification of Optimum Sequencing Depth Especially for De Novo Genome Assembly of Small Genomes Using Next Generation Sequencing Data

Aarti Desai, Veer Singh Marwah, Akshay Yadav, Vineet Jha, Kishor Dhaygude, Ujwala Bangar, Vivek Kulkarni, Abhay Jere

published 12 Apr 2013

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Phylogenetically Distinct Bacteria Involve Extensive Dechlorination of Aroclor 1260 in Sediment-Free Cultures

Shanquan Wang, Jianzhong He

published 15 Mar 2013

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miRNA Expression Profile Analysis in Kidney of Different Porcine Breeds

Oriol Timoneda, Ingrid Balcells, Jose Ignacio Núñez, Raquel Egea, Gonzalo Vera, Anna Castelló, Anna Tomàs, Armand Sánchez

published 25 Jan 2013

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Taxonomic Classification of Bacterial 16S rRNA Genes Using Short Sequencing Reads: Evaluation of Effective Study Designs

Orna Mizrahi-Man, Emily R. Davenport, Yoav Gilad

published 07 Jan 2013

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Two Different High Throughput Sequencing Approaches Identify Thousands of De Novo Genomic Markers for the Genetically Depleted Bornean Elephant

Reeta Sharma, Benoit Goossens, Célia Kun-Rodrigues, Tatiana Teixeira, Nurzhafarina Othman, Jason Q. Boone, Nathaniel K. Jue, Craig Obergfell, Rachel J. O'Neill, Lounès Chikhi

published 21 Nov 2012

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Detecting Identity by Descent and Homozygosity Mapping in Whole-Exome Sequencing Data

Zhong Zhuang, Alexander Gusev, Judy Cho, Itsik Pe'er

published 11 Oct 2012

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Identification and Characterization of Two Novel bla_KLUC Resistance Genes through Large-Scale Resistance Plasmids Sequencing

Teng Xu, Jun Ying, Xiaoding Yao, Yulong Song, Ping Ma, Bokan Bao, Weiyan Jiang, Xinmei Wu, Huifen Tou, Peizhen Li, Ping Ren, Jingxian Fei, Lei Yang, Qi Liu, Zuyuan Xu, Tieli Zhou, Liyan Ni, Qiyu Bao

published 09 Oct 2012

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