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High throughput sequencing

A Practical Comparison of De Novo Genome Assembly Software Tools for Next-Generation Sequencing Technologies

Wenyu Zhang, Jiajia Chen, [ ... ], Bairong Shen

Taxonomic Classification of Bacterial 16S rRNA Genes Using Short Sequencing Reads: Evaluation of Effective Study Designs

Orna Mizrahi-Man, Emily R. Davenport, Yoav Gilad

Systematic Design of 18S rRNA Gene Primers for Determining Eukaryotic Diversity in Microbial Consortia

Luisa W. Hugerth, Emilie E. L. Muller, [ ... ], Anders F. Andersson

Whole-Genome Sequencing and Assembly with High-Throughput, Short-Read Technologies

Andreas Sundquist, Mostafa Ronaghi, [ ... ], Serafim Batzoglou

Whole Genome Amplification and De novo Assembly of Single Bacterial Cells

Sébastien Rodrigue, Rex R. Malmstrom, [ ... ], Sallie W. Chisholm

Generalized DNA Barcode Design Based on Hamming Codes

Leonid V. Bystrykh

Identification of Optimum Sequencing Depth Especially for De Novo Genome Assembly of Small Genomes Using Next Generation Sequencing Data

Aarti Desai, Veer Singh Marwah, [ ... ], Abhay Jere

The Microbiome and Metabolites in Fermented Pu-erh Tea as Revealed by High-Throughput Sequencing and Quantitative Multiplex Metabolite Analysis

Yongjie Zhang, Ida Skaar, [ ... ], John W. Taylor

Taxonomic Precision of Different Hypervariable Regions of 16S rRNA Gene and Annotation Methods for Functional Bacterial Groups in Biological Wastewater Treatment

Feng Guo, Feng Ju, Lin Cai, Tong Zhang

High-Throughput Sequencing of Human Immunoglobulin Variable Regions with Subtype Identification

Merle Schanz, Thomas Liechti, [ ... ], Michael Huber

Sensitivity of Noninvasive Prenatal Detection of Fetal Aneuploidy from Maternal Plasma Using Shotgun Sequencing Is Limited Only by Counting Statistics

H. Christina Fan, Stephen R. Quake

Differential Expression of miRNAs in Colorectal Cancer: Comparison of Paired Tumor Tissue and Adjacent Normal Mucosa Using High-Throughput Sequencing

Julian Hamfjord, Astrid M. Stangeland, [ ... ], Elin H. Kure

The Effects of Freezing on Faecal Microbiota as Determined Using MiSeq Sequencing and Culture-Based Investigations

Fiona Fouhy, Jennifer Deane, [ ... ], Catherine Stanton

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