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Hidden Markov models

MixHMM: Inferring Copy Number Variation and Allelic Imbalance Using SNP Arrays and Tumor Samples Mixed with Stromal Cells

Zongzhi Liu, Ao Li, Vincent Schulz, Min Chen, David Tuck

published 01 Jun 2010

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Computational Protein Design: Validation and Possible Relevance as a Tool for Homology Searching and Fold Recognition

Marcel Schmidt am Busch, Audrey Sedano, Thomas Simonson

published 05 May 2010

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Detection and Architecture of Small Heat Shock Protein Monomers

Pierre Poulain, Jean-Christophe Gelly, Delphine Flatters

published 07 Apr 2010

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Genome-Wide Analysis of Binding Sites and Direct Target Genes of the Orphan Nuclear Receptor NR2F1/COUP-TFI

Celina Montemayor, Oscar A. Montemayor, Alex Ridgeway, Feng Lin, David A. Wheeler, Scott D. Pletcher, Fred A. Pereira

published 27 Jan 2010

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Two Forms of Activation-Induced Cytidine Deaminase Differing in Their Ability to Bind Agarose

Mirjam Metzner, Wolfgang Schuh, Edith Roth, Hans-Martin Jäck, Matthias Wabl

published 27 Jan 2010

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Effective Identification of Conserved Pathways in Biological Networks Using Hidden Markov Models

Xiaoning Qian, Byung-Jun Yoon

published 07 Dec 2009

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The Repertoire of Heterotrimeric G Proteins and RGS Proteins in Ciona intestinalis

R. Prasobh, Narayanan Manoj

published 06 Oct 2009

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Highly Sensitive Detection of Individual HEAT and ARM Repeats with HHpred and COACH

Fred Kippert, Dietlind L. Gerloff

published 24 Sep 2009

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An Integrated Approach to Identifying Cis-Regulatory Modules in the Human Genome

Kyoung-Jae Won, Saurabh Agarwal, Li Shen, Robert Shoemaker, Bing Ren, Wei Wang

published 12 May 2009

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Evolutionary Conservation of Orthoretroviral Long Terminal Repeats (LTRs) and ab initio Detection of Single LTRs in Genomic Data

Farid Benachenhou, Patric Jern, Merja Oja, Göran Sperber, Vidar Blikstad, Panu Somervuo, Samuel Kaski, Jonas Blomberg

published 13 Apr 2009

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Pattern-Selection Based Power Analysis and Discrimination of Low- and High-Grade Myelodysplastic Syndromes Study Using SNP Arrays

Xiaorong Yang, Xiaobo Zhou, Wan-Ting Huang, Lingyun Wu, Federico A. Monzon, Chung-Che Chang, Stephen T. C. Wong

published 08 Apr 2009

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Identification and Gene Expression Analysis of a Taxonomically Restricted Cysteine-Rich Protein Family in Reef-Building Corals

Shinichi Sunagawa, Michael K. DeSalvo, Christian R. Voolstra, Alejandro Reyes-Bermudez, Mónica Medina

published 13 Mar 2009

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Dissecting Nucleosome Free Regions by a Segmental Semi-Markov Model

Wei Sun, Wei Xie, Feng Xu, Michael Grunstein, Ker-Chau Li

published 06 Mar 2009

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