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Hidden Markov models

MixHMM: Inferring Copy Number Variation and Allelic Imbalance Using SNP Arrays and Tumor Samples Mixed with Stromal Cells

Zongzhi Liu, Ao Li, [ ... ], David Tuck

Computational Protein Design: Validation and Possible Relevance as a Tool for Homology Searching and Fold Recognition

Marcel Schmidt am Busch, Audrey Sedano, Thomas Simonson

Detection and Architecture of Small Heat Shock Protein Monomers

Pierre Poulain, Jean-Christophe Gelly, Delphine Flatters

Genome-Wide Analysis of Binding Sites and Direct Target Genes of the Orphan Nuclear Receptor NR2F1/COUP-TFI

Celina Montemayor, Oscar A. Montemayor, [ ... ], Fred A. Pereira

Two Forms of Activation-Induced Cytidine Deaminase Differing in Their Ability to Bind Agarose

Mirjam Metzner, Wolfgang Schuh, [ ... ], Matthias Wabl

Effective Identification of Conserved Pathways in Biological Networks Using Hidden Markov Models

Xiaoning Qian, Byung-Jun Yoon

The Repertoire of Heterotrimeric G Proteins and RGS Proteins in Ciona intestinalis

R. Prasobh, Narayanan Manoj

Highly Sensitive Detection of Individual HEAT and ARM Repeats with HHpred and COACH

Fred Kippert, Dietlind L. Gerloff

An Integrated Approach to Identifying Cis-Regulatory Modules in the Human Genome

Kyoung-Jae Won, Saurabh Agarwal, [ ... ], Wei Wang

Evolutionary Conservation of Orthoretroviral Long Terminal Repeats (LTRs) and ab initio Detection of Single LTRs in Genomic Data

Farid Benachenhou, Patric Jern, [ ... ], Jonas Blomberg

Pattern-Selection Based Power Analysis and Discrimination of Low- and High-Grade Myelodysplastic Syndromes Study Using SNP Arrays

Xiaorong Yang, Xiaobo Zhou, [ ... ], Stephen T. C. Wong

Identification and Gene Expression Analysis of a Taxonomically Restricted Cysteine-Rich Protein Family in Reef-Building Corals

Shinichi Sunagawa, Michael K. DeSalvo, [ ... ], Mónica Medina

Dissecting Nucleosome Free Regions by a Segmental Semi-Markov Model

Wei Sun, Wei Xie, [ ... ], Ker-Chau Li

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