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Hidden Markov models

Explicit-Duration Hidden Markov Model Inference of UP-DOWN States from Continuous Signals

James M. McFarland, Thomas T. G. Hahn, Mayank R. Mehta

published 28 Jun 2011

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Elucidation of Functional Markers from Aspergillus nidulans Developmental Regulator FlbB and Their Phylogenetic Distribution

Marc S. Cortese, Oier Etxebeste, Aitor Garzia, Eduardo A. Espeso, Unai Ugalde

published 10 Mar 2011

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The Contribution of Coevolving Residues to the Stability of KDO8P Synthase

Sharon H. Ackerman, Domenico L. Gatti

published 09 Mar 2011

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Hidden Markov Model Analysis of Maternal Behavior Patterns in Inbred and Reciprocal Hybrid Mice

Valeria Carola, Olivier Mirabeau, Cornelius T. Gross

published 08 Mar 2011

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Novel Analysis of Oceanic Surface Water Metagenomes Suggests Importance of Polyphosphate Metabolism in Oligotrophic Environments

Ben Temperton, Jack A. Gilbert, John P. Quinn, John W. McGrath

published 28 Jan 2011

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Evolutionary Distances in the Twilight Zone—A Rational Kernel Approach

Roland F. Schwarz, William Fletcher, Frank Förster, Benjamin Merget, Matthias Wolf, Jörg Schultz, Florian Markowetz

published 31 Dec 2010

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A Novel HMM-Based Method for Detecting Enriched Transcription Factor Binding Sites Reveals RUNX3 as a Potential Target in Pancreatic Cancer Biology

Liron Levkovitz, Nir Yosef, Marvin C. Gershengorn, Eytan Ruppin, Roded Sharan, Yoram Oron

published 22 Dec 2010

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Single-Molecule Analysis Reveals the Kinetics and Physiological Relevance of MutL-ssDNA Binding

Jonghyun Park, Yongmoon Jeon, Daekil In, Richard Fishel, Changill Ban, Jong-Bong Lee

published 12 Nov 2010

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HMMSplicer: A Tool for Efficient and Sensitive Discovery of Known and Novel Splice Junctions in RNA-Seq Data

Michelle T. Dimon, Katherine Sorber, Joseph L. DeRisi

published 08 Nov 2010

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Genome-Wide Identification of HrpL-Regulated Genes in the Necrotrophic Phytopathogen Dickeya dadantii 3937

Shihui Yang, Quan Peng, Qiu Zhang, Lifang Zou, Yan Li, Christelle Robert, Leighton Pritchard, Hui Liu, Raymond Hovey, Qi Wang, Paul Birch, Ian K. Toth, Ching-Hong Yang

published 19 Oct 2010

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A Score of the Ability of a Three-Dimensional Protein Model to Retrieve Its Own Sequence as a Quantitative Measure of Its Quality and Appropriateness

León P. Martínez-Castilla, Rogelio Rodríguez-Sotres

published 07 Sep 2010

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An Economic Evaluation of Home Management of Malaria in Uganda: An Interactive Markov Model

Yoel Lubell, Anne J. Mills, Christopher J. M. Whitty, Sarah G. Staedke

published 27 Aug 2010

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Novel Association Strategy with Copy Number Variation for Identifying New Risk Loci of Human Diseases

Xianfeng Chen, Xinlei Li, Ping Wang, Yang Liu, Zhenguo Zhang, Guoping Zhao, Haiming Xu, Jun Zhu, Xueying Qin, Suchao Chen, Landian Hu, Xiangyin Kong

published 20 Aug 2010

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