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Hidden Markov models

MP3: A Software Tool for the Prediction of Pathogenic Proteins in Genomic and Metagenomic Data

Ankit Gupta, Rohan Kapil, Darshan B. Dhakan, Vineet K. Sharma

A geographical location prediction method based on continuous time series Markov model

Yongping Du, Chencheng Wang, [ ... ], Wenyang Guo

Accounting For Alignment Uncertainty in Phylogenomics

Martin Wu, Sourav Chatterji, Jonathan A. Eisen

Profile Hidden Markov Models for the Detection of Viruses within Metagenomic Sequence Data

Peter Skewes-Cox, Thomas J. Sharpton, Katherine S. Pollard, Joseph L. DeRisi

Hidden Markov Models: The Best Models for Forager Movements?

Rocio Joo, Sophie Bertrand, Jorge Tam, Ronan Fablet

Expectation-Maximization Binary Clustering for Behavioural Annotation

Joan Garriga, John R. B. Palmer, Aitana Oltra, Frederic Bartumeus

Curli Functional Amyloid Systems Are Phylogenetically Widespread and Display Large Diversity in Operon and Protein Structure

Morten S. Dueholm, Mads Albertsen, Daniel Otzen, Per Halkjær Nielsen

Analyses and Comparison of Accuracy of Different Genotype Imputation Methods

Yu-Fang Pei, Jian Li, [ ... ], Hong-Wen Deng

Linkage Analysis and QTL Mapping Using SNP Dosage Data in a Tetraploid Potato Mapping Population

Christine A. Hackett, Karen McLean, Glenn J. Bryan

Movement Activity Based Classification of Animal Behaviour with an Application to Data from Cheetah (Acinonyx jubatus)

Steffen Grünewälder, Femke Broekhuis, [ ... ], Stephen Hailes

PASTEC: An Automatic Transposable Element Classification Tool

Claire Hoede, Sandie Arnoux, [ ... ], Hadi Quesneville

A comparative analysis of current phasing and imputation software

Adriano De Marino, Abdallah Amr Mahmoud, [ ... ], Puya G. Yazdi

Prediction of Membrane Transport Proteins and Their Substrate Specificities Using Primary Sequence Information

Nitish K. Mishra, Junil Chang, Patrick X. Zhao

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