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Hidden Markov models

Insect Innate Immunity Database (IIID): An Annotation Tool for Identifying Immune Genes in Insect Genomes

Robert M. Brucker, Lisa J. Funkhouser, Shefali Setia, Rini Pauly, Seth R. Bordenstein

published 12 Sep 2012

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Evolutionary Conservation of the Ribosomal Biogenesis Factor Rbm19/Mrd1: Implications for Function

Yvonne Kallberg, Åsa Segerstolpe, Fredrik Lackmann, Bengt Persson, Lars Wieslander

published 12 Sep 2012

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A Bioinformatic Strategy for the Detection, Classification and Analysis of Bacterial Autotransporters

Nermin Celik, Chaille T. Webb, Denisse L. Leyton, Kathryn E. Holt, Eva Heinz, Rebecca Gorrell, Terry Kwok, Thomas Naderer, Richard A. Strugnell, Terence P. Speed, Rohan D. Teasdale, Vladimir A. Likić, Trevor Lithgow

published 14 Aug 2012

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Identifying Protein Phosphorylation Sites with Kinase Substrate Specificity on Human Viruses

Neil Arvin Bretaña, Cheng-Tsung Lu, Chiu-Yun Chiang, Min-Gang Su, Kai-Yao Huang, Tzong-Yi Lee, Shun-Long Weng

published 23 Jul 2012

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A Comparison of Gene Region Simulation Methods

Audrey E. Hendricks, Josée Dupuis, Mayetri Gupta, Mark W. Logue, Kathryn L. Lunetta

published 18 Jul 2012

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Beyond Captions: Linking Figures with Abstract Sentences in Biomedical Articles

Joseph P. Bockhorst, John M. Conroy, Shashank Agarwal, Dianne P. O’Leary, Hong Yu

published 18 Jul 2012

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Classification of HIV-1 Sequences Using Profile Hidden Markov Models

Sanjiv K. Dwivedi, Supratim Sengupta

published 18 May 2012

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The Impact of Errors in Copy Number Variation Detection Algorithms on Association Results

Nathan E. Wineinger, Hemant K. Tiwari

published 16 Apr 2012

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Statistical Inference of In Vivo Properties of Human DNA Methyltransferases from Double-Stranded Methylation Patterns

Audrey Q. Fu, Diane P. Genereux, Reinhard Stöger, Alice F. Burden, Charles D. Laird, Matthew Stephens

published 19 Mar 2012

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Single Molecule Analysis Research Tool (SMART): An Integrated Approach for Analyzing Single Molecule Data

Max Greenfeld, Dmitri S. Pavlichin, Hideo Mabuchi, Daniel Herschlag

published 20 Feb 2012

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Accounting For Alignment Uncertainty in Phylogenomics

Martin Wu, Sourav Chatterji, Jonathan A. Eisen

published 17 Jan 2012

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A New Method for Inferring Hidden Markov Models from Noisy Time Sequences

David Kelly, Mark Dillingham, Andrew Hudson, Karoline Wiesner

published 11 Jan 2012

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The Origin of GPCRs: Identification of Mammalian like Rhodopsin, Adhesion, Glutamate and Frizzled GPCRs in Fungi

Arunkumar Krishnan, Markus Sällman Almén, Robert Fredriksson, Helgi B. Schiöth

published 04 Jan 2012

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