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Hidden Markov models

SVM-Based Prediction of Propeptide Cleavage Sites in Spider Toxins Identifies Toxin Innovation in an Australian Tarantula

Emily S. W. Wong, Margaret C. Hardy, David Wood, Timothy Bailey, Glenn F. King

published 22 Jul 2013

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Exploring the Adenylation Domain Repertoire of Nonribosomal Peptide Synthetases Using an Ensemble of Sequence-Search Methods

Guillermin Agüero-Chapin, Reinaldo Molina-Ruiz, Emanuel Maldonado, Gustavo de la Riva, Aminael Sánchez-Rodríguez, Vitor Vasconcelos, Agostinho Antunes

published 16 Jul 2013

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The Reading of Components of Diabetic Retinopathy: An Evolutionary Approach for Filtering Normal Digital Fundus Imaging in Screening and Population Based Studies

Hongying Lilian Tang, Jonathan Goh, Tunde Peto, Bingo Wing-Kuen Ling, Lutfiah Ismail Al turk, Yin Hu, Su Wang, George Michael Saleh

published 01 Jul 2013

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Plasmidome-Analysis of ESBL-Producing Escherichia coli Using Conventional Typing and High-Throughput Sequencing

Alma Brolund, Oscar Franzén, Öjar Melefors, Karin Tegmark-Wisell, Linus Sandegren

published 13 Jun 2013

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Hidden Markov Models for Evolution and Comparative Genomics Analysis

Nadezda A. Bykova, Alexander V. Favorov, Andrey A. Mironov

published 07 Jun 2013

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Linkage Analysis and QTL Mapping Using SNP Dosage Data in a Tetraploid Potato Mapping Population

Christine A. Hackett, Karen McLean, Glenn J. Bryan

published 21 May 2013

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Identification of Bacterial Protein O-Oligosaccharyltransferases and Their Glycoprotein Substrates

Benjamin L. Schulz, Freda E. C. Jen, Peter M. Power, Christopher E. Jones, Kate L. Fox, Shan C. Ku, Joanne T. Blanchfield, Michael P. Jennings

published 03 May 2013

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Classification of the Adenylation and Acyl-Transferase Activity of NRPS and PKS Systems Using Ensembles of Substrate Specific Hidden Markov Models

Barzan I. Khayatt, Lex Overmars, Roland J. Siezen, Christof Francke

published 18 Apr 2013

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Zoledronic Acid Restores Doxorubicin Chemosensitivity and Immunogenic Cell Death in Multidrug-Resistant Human Cancer Cells

Chiara Riganti, Barbara Castella, Joanna Kopecka, Ivana Campia, Marta Coscia, Gianpiero Pescarmona, Amalia Bosia, Dario Ghigo, Massimo Massaia

published 12 Apr 2013

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The Geometry of Locomotive Behavioral States in C. elegans

Thomas Gallagher, Theresa Bjorness, Robert Greene, Young-Jai You, Leon Avery

published 28 Mar 2013

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Classify Hyperdiploidy Status of Multiple Myeloma Patients Using Gene Expression Profiles

Yingxiang Li, Xujun Wang, Haiyang Zheng, Chengyang Wang, Stéphane Minvielle, Florence Magrangeas, Hervé Avet-Loiseau, Parantu K. Shah, Yong Zhang, Nikhil C. Munshi, Cheng Li

published 15 Mar 2013

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ORFcor: Identifying and Accommodating ORF Prediction Inconsistencies for Phylogenetic Analysis

Jonathan L. Klassen, Cameron R. Currie

published 06 Mar 2013

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The SHOCT Domain: A Widespread Domain Under-Represented in Model Organisms

Ruth Y. Eberhardt, S. Josefin Bartholdson, Marco Punta, Alex Bateman

published 25 Feb 2013

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