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Graphs

Statistical Tests for Associations between Two Directed Acyclic Graphs

Robert Hoehndorf, Axel-Cyrille Ngonga Ngomo, Michael Dannemann, Janet Kelso

A Software Tool to Model Genetic Regulatory Networks. Applications to the Modeling of Threshold Phenomena and of Spatial Patterning in Drosophila

Rui Dilão, Daniele Muraro

Insights into the Influence of Priors in Posterior Mapping of Discrete Morphological Characters: A Case Study in Annonaceae

Thomas L. P. Couvreur, Gerrit Gort, [ ... ], Lars W. Chatrou

Efficient and Exact Sampling of Simple Graphs with Given Arbitrary Degree Sequence

Charo I. Del Genio, Hyunju Kim, Zoltán Toroczkai, Kevin E. Bassler

Explicit Logic Circuits Predict Local Properties of the Neocortex's Physiology and Anatomy

Lane Yoder

Altered Functional Connectivity and Small-World in Mesial Temporal Lobe Epilepsy

Wei Liao, Zhiqiang Zhang, [ ... ], Huafu Chen

Reaction Factoring and Bipartite Update Graphs Accelerate the Gillespie Algorithm for Large-Scale Biochemical Systems

Sagar Indurkhya, Jacob Beal

Applied Climate-Change Analysis: The Climate Wizard Tool

Evan H. Girvetz, Chris Zganjar, [ ... ], Joshua J. Lawler

A Large Scale Analysis of Information-Theoretic Network Complexity Measures Using Chemical Structures

Matthias Dehmer, Nicola Barbarini, Kurt Varmuza, Armin Graber

Effective Identification of Conserved Pathways in Biological Networks Using Hidden Markov Models

Xiaoning Qian, Byung-Jun Yoon

Pluripotent Transcription Factors Possess Distinct Roles in Normal versus Transformed Human Stem Cells

Junfeng Ji, Tamra E. Werbowetski-Ogilvie, [ ... ], Mickie Bhatia

Contemporary Parallel Diversification, Antipredator Adaptations and Phenotypic Integration in an Aquatic Isopod

Fabrice Eroukhmanoff, Erik I. Svensson

Optimized Null Model for Protein Structure Networks

Tijana Milenković, Ioannis Filippis, Michael Lappe, Nataša Pržulj

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