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Genomic databases

SRplot: A free online platform for data visualization and graphing

Doudou Tang, Mingjie Chen, [ ... ], Yewei Wang

Fast Identification and Removal of Sequence Contamination from Genomic and Metagenomic Datasets

Robert Schmieder, Robert Edwards

MetaSim—A Sequencing Simulator for Genomics and Metagenomics

Daniel C. Richter, Felix Ott, [ ... ], Daniel H. Huson

Quickly Finding Orthologs as Reciprocal Best Hits with BLAT, LAST, and UBLAST: How Much Do We Miss?

Natalie Ward, Gabriel Moreno-Hagelsieb

Integrated Metagenomics/Metaproteomics Reveals Human Host-Microbiota Signatures of Crohn's Disease

Alison R. Erickson, Brandi L. Cantarel, [ ... ], Janet K. Jansson

miRWalk: An online resource for prediction of microRNA binding sites

Carsten Sticht, Carolina De La Torre, Alisha Parveen, Norbert Gretz

Identification of fungi in shotgun metagenomics datasets

Paul D. Donovan, Gabriel Gonzalez, [ ... ], Kimihito Ito

Abundant Human DNA Contamination Identified in Non-Primate Genome Databases

Mark S. Longo, Michael J. O'Neill, Rachel J. O'Neill

Piphillin: Improved Prediction of Metagenomic Content by Direct Inference from Human Microbiomes

Shoko Iwai, Thomas Weinmaier, [ ... ], Todd Z. DeSantis

SEED Servers: High-Performance Access to the SEED Genomes, Annotations, and Metabolic Models

Ramy K. Aziz, Scott Devoid, [ ... ], Fangfang Xia

Assessment of Common and Emerging Bioinformatics Pipelines for Targeted Metagenomics

Léa Siegwald, Hélène Touzet, [ ... ], Ségolène Caboche

Comparative Bacterial Proteomics: Analysis of the Core Genome Concept

Stephen J. Callister, Lee Ann McCue, [ ... ], Mary S. Lipton

How Large Is the Metabolome? A Critical Analysis of Data Exchange Practices in Chemistry

Tobias Kind, Martin Scholz, Oliver Fiehn

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