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Genetic epidemiology

Porcine circovirus 2 (PCV-2) genotype update and proposal of a new genotyping methodology

Giovanni Franzo, Joaquim Segalés

published 06 Dec 2018

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Clonality and geographic structure of host-specialized populations of Corynespora cassiicola causing emerging target spot epidemics in the southeastern United States

Leilani G. Sumabat, Robert C. Kemerait Jr., Dong Kyun Kim, Yeshwant R. Mehta, Marin T. Brewer

published 15 Oct 2018

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Evolutionary history and spatio-temporal dynamics of dengue virus serotypes in an endemic region of Colombia

Cinthy L. Jiménez-Silva, María Fernanda Carreño, Ayda Susana Ortiz-Baez, Luz Aida Rey, Christian Julián Villabona-Arenas, Raquel E. Ocazionez

published 29 Aug 2018

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HIV-1 diversity among young women in rural South Africa: HPTN 068

Mariya V. Sivay, Sarah E. Hudelson, Jing Wang, Yaw Agyei, Erica L. Hamilton, Amanda Selin, Ann Dennis, Kathleen Kahn, F. Xavier Gomez-Olive, Catherine MacPhail, James P. Hughes, Audrey Pettifor, Susan H. Eshleman, Mary Kathryn Grabowski

published 05 Jul 2018

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MLST reveals a clonal population structure for Cryptococcus neoformans molecular type VNI isolates from clinical sources in Amazonas, Northern-Brazil

Diego Fernando Silva Rocha, Katia Santana Cruz, Carla Silvana da Silva Santos, Lizandra Stephanny Fernandes Menescal, João Ricardo da Silva Neto, Silviane Bezerra Pinheiro, Lucyane Mendes Silva, Luciana Trilles, João Vicente Braga de Souza

published 08 Jun 2018

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Rapid and safe one-step extraction method for the identification of Brucella strains at genus and species level by MALDI-TOF mass spectrometry

Michela Sali, Flavio De Maio, Michela Tarantino, Giuliano Garofolo, Manuela Tittarelli, Lorena Sacchini, Katiuscia Zilli, Paolo Pasquali, Paola Petrucci, Cinzia Marianelli, Massimiliano Francia, Maurizio Sanguinetti, Rosanna Adone

published 05 Jun 2018

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HIV-1 genetic transmission networks among men who have sex with men in Kunming, China

Min Chen, Yanling Ma, Huichao Chen, Jie Dai, Lijuan Dong, Chaojun Yang, Youfang Li, Hongbing Luo, Renzhong Zhang, Xiaomei Jin, Li Yang, Allen Ka Loon Cheung, Manhong Jia, Zhizhong Song

published 26 Apr 2018

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Large and finite sample properties of a maximum-likelihood estimator for multiplicity of infection

Kristan Alexander Schneider

published 09 Apr 2018

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Epidemiological links between tuberculosis cases identified twice as efficiently by whole genome sequencing than conventional molecular typing: A population-based study

Rana Jajou, Albert de Neeling, Rianne van Hunen, Gerard de Vries, Henrieke Schimmel, Arnout Mulder, Richard Anthony, Wim van der Hoek, Dick van Soolingen

published 04 Apr 2018

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Epidemiological and genetic characteristics of EV71 in hand, foot, and mouth disease in Guangxi, southern China, from 2010 to 2015

Minmei Chen, Yu Ju, Min Chen, Zhenguo Xie, Kaijiao Zhou, Yi Tan, Jianjun Mo

published 07 Dec 2017

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Molecular and epidemiological characterization of carbapenemase-producing Enterobacteriaceae in Norway, 2007 to 2014

Ørjan Samuelsen, Søren Overballe-Petersen, Jørgen Vildershøj Bjørnholt, Sylvain Brisse, Michel Doumith, Neil Woodford, Katie L. Hopkins, Bettina Aasnæs, Bjørg Haldorsen, Arnfinn Sundsfjord, on behalf of The Norwegian Study Group on CPE

published 15 Nov 2017

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High prevalence and diversity of HIV-1 non-B genetic forms due to immigration in southern Spain: A phylogeographic approach

Santiago Pérez-Parra, Natalia Chueca, Marta Álvarez, Juan Pasquau, Mohamed Omar, Antonio Collado, David Vinuesa, Ana Belen Lozano, Gonzalo Yebra, Federico García

published 30 Oct 2017

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EWET: Data collection and interface for the genetic analysis of Echinococcus multilocularis based on EmsB microsatellite

Jenny Knapp, Sylvie Damy, Jonathan Brillaud, Jean-Daniel Tissot, Jérémy Navion, Raphael Mélior, Eve Afonso, Vanessa Hormaz, Bruno Gottstein, Gérald Umhang, Adriano Casulli, Frédéric Dadeau, Laurence Millon, Francis Raoul

published 03 Oct 2017

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