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Genetic elements

Pan-genome survey of the fish pathogen Yersinia ruckeri links accessory- and amplified genes to virulence

Andreas Riborg, Snorre Gulla, Eve Zeyl Fiskebeck, David Ryder, David W. Verner-Jeffreys, Duncan J. Colquhoun, Timothy J. Welch

published 11 May 2023

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Enabling low-cost and robust essentiality studies with high-throughput transposon mutagenesis (HTTM)

Antoine Champie, Amélie De Grandmaison, Simon Jeanneau, Frédéric Grenier, Pierre-Étienne Jacques, Sébastien Rodrigue

published 11 Apr 2023

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Knockout of DDM1 in Physcomitrium patens disrupts DNA methylation with a minute effect on transposon regulation and development

Ofir Griess, Katherine Domb, Aviva Katz, Keith D. Harris, Karina G. Heskiau, Nir Ohad, Assaf Zemach

published 08 Mar 2023

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Drosophila melanogaster resilin improves the mechanical properties of transgenic silk

Shuo Zhao, Xiaogang Ye, Xiangping Dai, Xinqiu Wang, Shihua Yu, Boxiong Zhong

published 03 Mar 2023

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Investigating the origin of subtelomeric and centromeric AT-rich elements in Aspergillus flavus

Arthur J. Lustig

published 09 Feb 2023

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A large-scale genetic screen identifies genes essential for motility in Agrobacterium fabrum

Diana G. Calvopina-Chavez, Robyn E. Howarth, Audrey K. Memmott, Oscar H. Pech Gonzalez, Caleb B. Hafen, Kyson T. Jensen, Alex B. Benedict, Jessica D. Altman, Brittany S. Burnside, Justin S. Childs, Samuel W. Dallon, Alexa C. DeMarco, Kirsten C. Flindt, Sarah A. Grover, Elizabeth Heninger, Christina S. Iverson, Abigail K. Johnson, Jack B. Lopez, McKay A. Meinzer, Brook A. Moulder, Rebecca I. Moulton, Hyrum S. Russell, Tiana M. Scott, Yuka Shiobara, Mason D. Taylor, Kathryn E. Tippets, Kayla M. Vainerere, Isabella C. Von Wallwitz, Madison Wagley, Megumi S. Wiley, Naomi J. Young, Joel S. Griffitts

published 04 Jan 2023

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In vitro genome editing activity of Cas9 in somatic cells after random and transposon-based genomic Cas9 integration

Jenny-Helena Söllner, Hendrik Johannes Sake, Antje Frenzel, Rita Lechler, Doris Herrmann, Walter Fuchs, Björn Petersen

published 30 Dec 2022

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Identification of novel genes involved in the biofilm formation process of Avian Pathogenic Escherichia coli (APEC)

Meaghan M. Young, Aline L. de Oliveira, Lisa K. Nolan, Nicolle L. Barbieri, Catherine M. Logue

published 19 Dec 2022

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Classification of bacterial plasmid and chromosome derived sequences using machine learning

Xiaohui Zou, Marcus Nguyen, Jamie Overbeek, Bin Cao, James J. Davis

published 16 Dec 2022

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Quantitative PCR from human genomic DNA: The determination of gene copy numbers for congenital adrenal hyperplasia and RCCX copy number variation

Márton Doleschall, Ottó Darvasi, Zoltán Herold, Zoltán Doleschall, Gábor Nyirő, Anikó Somogyi, Péter Igaz, Attila Patócs

published 01 Dec 2022

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Gene co-expression network analysis of the human gut commensal bacterium Faecalibacterium prausnitzii in R-Shiny

Sandrine Auger, Virginie Mournetas, Hélène Chiapello, Valentin Loux, Philippe Langella, Jean-Marc Chatel

published 18 Nov 2022

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The small RNA landscape is stable with age and resistant to loss of dFOXO signaling in Drosophila

Siobhan Gartland, Baosheng Zeng, Michael T. Marr II

published 16 Nov 2022

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Fecal carriage and clonal dissemination of bla_NDM-1 carrying Klebsiella pneumoniae sequence type 147 at an intensive care unit in Lao PDR

Tsegaye Sewunet, Sriram K. K., Ha Hoang Nguyen, Noikaseumsy Sithivong, Ngoc Thi Bich Hoang, Vanphanom Sychareun, Kokasia Nengmongvang, Mattias Larsson, Linus Olson, Fredrik Westerlund, Christian G. Giske

published 04 Oct 2022

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