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Gene sequencing

Whole-genome sequencing for the characterization of resistance mechanisms and epidemiology of colistin-resistant Acinetobacter baumannii

Chorong Hahm, Hae-Sun Chung, Miae Lee

published 04 Mar 2022

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Single gene targeted nanopore sequencing enables simultaneous identification and antimicrobial resistance detection of sexually transmitted infections

Liqing Zhou, Andrea Lopez Rodas, Luz Marina Llangarí, Natalia Romero Sandoval, Philip Cooper, Syed Tariq Sadiq

published 21 Jan 2022

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Confounds of using the unc-58 selection marker highlights the importance of genotyping co-CRISPR genes

Helena Rawsthorne-Manning, Fernando Calahorro, Patricia G. Izquierdo, Philippe Tardy, Thomas Boulin, Lindy Holden-Dye, Vincent O’Connor, James Dillon

published 18 Jan 2022

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Evaluation of a parasite-density based pooled targeted amplicon deep sequencing (TADS) method for molecular surveillance of Plasmodium falciparum drug resistance genes in Haiti

Swarnali Louha, Camelia Herman, Mansi Gupta, Dhruviben Patel, Julia Kelley, Je-Hoon M. OH, Janani Guru, Jean F. Lemoine, Michelle A. Chang, Udhayakumar Venkatachalam, Eric Rogier, Eldin Talundzic

published 14 Jan 2022

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Longitudinal variability in the urinary microbiota of healthy premenopausal women and the relation to neighboring microbial communities: A pilot study

Lena M. Biehl, Fedja Farowski, Catharina Hilpert, Angela Nowag, Anne Kretzschmar, Nathalie Jazmati, Anastasia Tsakmaklis, Imke Wieters, Yascha Khodamoradi, Hilmar Wisplinghoff, Maria J. G. T. Vehreschild

published 14 Jan 2022

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Gene excavation and expression analysis of CYP and UGT related to the post modifying stage of gypenoside biosynthesis in Gynostemma pentaphyllum (Thunb.) Makino by comprehensive analysis of RNA and proteome sequencing

Yangmei Zhang, Qicong Chen, Yuanheng Huang, Ruiqiang Zhao, Jian Sun, Xidong Yuan, Huiming Xu, Huiyu Liu, Yaosheng Wu

published 07 Dec 2021

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Exploring the nasopharyngeal microbiota composition in infants with whooping cough: A test-negative case-control study

Muntsa Rocafort, Desiree Henares, Pedro Brotons, Irene Barrabeig, Cristian Launes, Lore Merdrignac, Marta Valenciano, Angela Domínguez, Pere Godoy, Carmen Muñoz-Almagro

published 29 Oct 2021

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Targeted capture sequencing identifies genetic variations of GRK4 and RDH8 in Han Chinese with essential hypertension in Xinjiang

Wenxi Jiang, Xizi Wang, Ronghui Li, Panpan Wang, Guangle Shan, Xiaodong Jia, Mingliang Gu

published 23 Jul 2021

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Archival bone marrow smears are useful in targeted next-generation sequencing for diagnosing myeloid neoplasms

Daichi Sadato, Chizuko Hirama, Ai Kaiho-Soma, Ayaka Yamaguchi, Hiroko Kogure, Sonomi Takakuwa, Mina Ogawa, Noriko Doki, Kazuteru Ohashi, Hironori Harada, Keisuke Oboki, Yuka Harada

published 23 Jul 2021

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Rare functional genetic variants in COL7A1, COL6A5, COL1A2 and COL5A2 frequently occur in Chiari Malformation Type 1

Aintzane Urbizu, Melanie E. Garrett, Karen Soldano, Oliver Drechsel, Dorothy Loth, Anna Marcé-Grau, Olga Mestres i Soler, Maria A. Poca, Stephan Ossowski, Alfons Macaya, Francis Loth, Rick Labuda, Allison Ashley-Koch

published 11 May 2021

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Analytical validation and performance characteristics of a 48-gene next-generation sequencing panel for detecting potentially actionable genomic alterations in myeloid neoplasms

Sun Hee Rosenthal, Anna Gerasimova, Charles Ma, Hai-Rong Li, Andrew Grupe, Hansook Chong, Allan Acab, Alla Smolgovsky, Renius Owen, Christopher Elzinga, Rebecca Chen, Daniel Sugganth, Tracey Freitas, Jennifer Graham, Kristen Champion, Anindya Bhattacharya, Frederick Racke, Felicitas Lacbawan

published 28 Apr 2021

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BH₄-deficient hyperphenylalaninemia in Russia

Polina Gundorova, Irina A. Kuznetcova, Galina V. Baydakova, Anna A. Stepanova, Yulia S. Itkis, Victoria S. Kakaulina, Irina P. Alferova, Lidya V. Lyazina, Lilya P. Andreeva, Ilya Kanivets, Ekaterina Y. Zakharova, Sergey I. Kutsev, Aleksander V. Polyakov

published 06 Apr 2021

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High mutation burden in the checkpoint and micro-RNA processing genes in myelodysplastic syndrome

Ivan Sergeevich Moiseev, Nikolay Yurevich Tcvetkov, Ildar Munerovich Barkhatov, Maria Vladimirovna Barabanshikova, Dmitrii Sergeevich Bug, Natalya Vitalievna Petuhova, Artem Valerievich Tishkov, Evgenyi Alexandrovich Bakin, Ekaterina Andreevna Izmailova, Alena Igorevna Shakirova, Alexandr Dmitrievich Kulagin, Elena Vladislavovna Morozova

published 17 Mar 2021

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