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Gene sequencing

Direct Comparisons of Illumina vs. Roche 454 Sequencing Technologies on the Same Microbial Community DNA Sample

Chengwei Luo, Despina Tsementzi, [ ... ], Konstantinos T. Konstantinidis

Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies

Patrick D. Schloss, Dirk Gevers, Sarah L. Westcott

Comparing bioinformatic pipelines for microbial 16S rRNA amplicon sequencing

Andrei Prodan, Valentina Tremaroli, [ ... ], Evgeni Levin

Strengths and Limitations of 16S rRNA Gene Amplicon Sequencing in Revealing Temporal Microbial Community Dynamics

Rachel Poretsky, Luis M. Rodriguez-R, [ ... ], Konstantinos T. Konstantinidis

Taxonomic Classification of Bacterial 16S rRNA Genes Using Short Sequencing Reads: Evaluation of Effective Study Designs

Orna Mizrahi-Man, Emily R. Davenport, Yoav Gilad

16S rRNA gene sequencing and healthy reference ranges for 28 clinically relevant microbial taxa from the human gut microbiome

Daniel E. Almonacid, Laurens Kraal, [ ... ], Zachary S. Apte

PoPoolation: A Toolbox for Population Genetic Analysis of Next Generation Sequencing Data from Pooled Individuals

Robert Kofler, Pablo Orozco-terWengel, [ ... ], Christian Schlötterer

Microbial Community Composition and Diversity via 16S rRNA Gene Amplicons: Evaluating the Illumina Platform

Lucas Sinclair, Omneya Ahmed Osman, Stefan Bertilsson, Alexander Eiler

Comparison of normalization approaches for gene expression studies completed with high-throughput sequencing

Farnoosh Abbas-Aghababazadeh, Qian Li, Brooke L. Fridley

Comparing Apples and Oranges?: Next Generation Sequencing and Its Impact on Microbiome Analysis

Adam G. Clooney, Fiona Fouhy, [ ... ], Marcus J. Claesson

HLA Typing for the Next Generation

Neema P. Mayor, James Robinson, [ ... ], Steven G. E. Marsh

Colorectal Cancer and the Human Gut Microbiome: Reproducibility with Whole-Genome Shotgun Sequencing

Emily Vogtmann, Xing Hua, [ ... ], Rashmi Sinha

Species Identification and Profiling of Complex Microbial Communities Using Shotgun Illumina Sequencing of 16S rRNA Amplicon Sequences

Swee Hoe Ong, Vinutha Uppoor Kukkillaya, [ ... ], Niranjan Nagarajan

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