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Gene sequencing

Study protocol: Effect of inulin supplementation on gut microbiota in patients with oral lichen planus — A double-blind, randomised, placebo-controlled parallel-group trial

Koki Nambu, Naoki Kaneko, Shiho Yokomizo, Hu Chen, Lijing Yan, Wang Shiyao, Ryusei Shizuma, Eiji Iwata, Yukiko Ohyama, Shohei Akagawa, Soichiro Ibaragi, Shintaro Kawano, Masafumi Moriyama

published 13 Aug 2026

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CLR-Seq: A pipeline to identify bacterial microbiota species with immune-relevant glycan moieties through human C-type lectin receptor interaction

Jasper Mol, Rob van Dalen, Yvonne Pannekoek, Malgorzata E. Mnich, Marcel R. de Zoete, Mark Davids, Hilde Herrema, Nina M. van Sorge

published 13 Aug 2026

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Microbiome analysis of bronchoalveolar lavage (BAL) specimens from immunocompromised patients with pneumonia compared to those from healthy volunteers

Zareen Fatima, Matthew D. Surette, Sarah Marttala, Daniela Leto, Padman Jayaratne, Fiona Smaill, Marek Smieja, Mohammad Rubayet Hasan

published 10 Jun 2026

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From genes to diagnosis: The impact of UNC5B and DOK5 in intracranial aneurysm detection and pathogenesis

Zekun Ma, Pengfei Wu, Alimasi Abulizi, Wenbo Yang, Aierpati Maimaiti, Paziliya Akram, Zengliang Wang

published 13 Mar 2026

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CoSMIC: A hybrid approach for large-scale, high-resolution microbial profiling of novel niches

Maor Knafo, Shahar Rezenman, Tal Idan, Michael Elgart, Shlomi Dagan, Vered Zavaro, Ziv Reich, Ruti Kapon, Dagan Sade, Noam Shental

published 27 Jan 2026

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Bacterial community associated with the surface and inside of centipede forcipules: Identification and characterization

Yasutaka Tanaka, Daiki Mizushima, Yoshimitsu Izawa, Tomohiro Matsumura, Chikara Yonekawa, Hirotomo Kato, Takashi Mato

published 16 Jan 2026

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Evaluation of potential of targeted sequencing through mutational signature simulation

Keisuke Kodama, Yiwei Ling, Hiroshi Ichikawa, Toshifumi Wakai, Shujiro Okuda

published 25 Jun 2025

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Optimizing genomic diversity assessments for conservation of Bromus auleticus (Trinius ex Nees) using individual and pooled sequencing

Luciana Gillman, Federico Condón, Cesar Petroli, Mercedes Rivas

published 25 Jun 2025

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Host-pathogen protein interaction studies: quality control of cDNA libraries using nanopore sequencing

Cécile Schimmich, Mathilde Gondard, Gregory Caignard, José-Carlos Valle-Casuso, Damien Vitour, François Piumi

published 30 May 2025

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Characterization of blood microbial population in beef calves with clinical signs of sepsis using 16S rRNA gene sequencing

Giuliano Borriello, Flaminia Valentini, Sara Ferrini, Giorgia Di Muro, Giulia Cagnotti, Elena Grego, Angela Maria Catania, Maria Cristina Stella, Ugo Ala, Patrizia Nebbia, Antonio D’Angelo, Claudio Bellino

published 23 May 2025

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Effect of rabbit gastrointestinal stasis (RGIS) on the fecal microbiota of pet rabbits (Oryctolagus cuniculus)

Faith M. Rahic-Seggerman, Cayla Iske, Jennifer Graham, Nicole Furst, Stephan Schmitz-Esser, Micah R. Kohles

published 25 Feb 2025

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stilPCR increases the effective sequencing length of Illumina targeted next-generation sequencing

Jason D. Limberis, Roland J. Nagel, Soumitesh Chakravorty, Dena Block, Scott Dewell, Alina Nalyvayko, Zach Howard, Grant Theron, Rouxjeane Venter, John Z. Metcalfe

published 09 Dec 2024

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Rethreading the needle: A novel molecular index of soil health (MISH) using microbial functional genes to predict soil health management

Heather L. Deel, Daniel K. Manter, Jennifer M. Moore

published 02 Dec 2024

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