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DNA sequencing

PCR Biases Distort Bacterial and Archaeal Community Structure in Pyrosequencing Datasets

Ameet J. Pinto, Lutgarde Raskin

Use of FFPE-derived DNA in next generation sequencing: DNA extraction methods

Samantha J. McDonough, Aditya Bhagwate, [ ... ], Julie M. Cunningham

A Versatile Medium for Cultivating Methanogenic Archaea

Saber Khelaifia, Didier Raoult, Michel Drancourt

Large Scale Loss of Data in Low-Diversity Illumina Sequencing Libraries Can Be Recovered by Deferred Cluster Calling

Felix Krueger, Simon R. Andrews, Cameron S. Osborne

Not All Sequence Tags Are Created Equal: Designing and Validating Sequence Identification Tags Robust to Indels

Brant C. Faircloth, Travis C. Glenn

A Filtering Method to Generate High Quality Short Reads Using Illumina Paired-End Technology

A. Murat Eren, Joseph H. Vineis, Hilary G. Morrison, Mitchell L. Sogin

Analysis of 16S rRNA Amplicon Sequencing Options on the Roche/454 Next-Generation Titanium Sequencing Platform

Hideyuki Tamaki, Chris L. Wright, [ ... ], Wen-Tso Liu

FastUniq: A Fast De Novo Duplicates Removal Tool for Paired Short Reads

Haibin Xu, Xiang Luo, [ ... ], Shilin Chen

Microbial resolution of whole genome shotgun and 16S amplicon metagenomic sequencing using publicly available NEON data

Kyle D. Brumfield, Anwar Huq, [ ... ], Menu B. Leddy

HLA Typing from 1000 Genomes Whole Genome and Whole Exome Illumina Data

Endre Major, Krisztina Rigó, [ ... ], Szilveszter Juhos

Assessment of the quality of DNA from various formalin-fixed paraffin-embedded (FFPE) tissues and the use of this DNA for next-generation sequencing (NGS) with no artifactual mutation

Naoki Einaga, Akio Yoshida, [ ... ], Mariko Esumi

A Universal Method for Species Identification of Mammals Utilizing Next Generation Sequencing for the Analysis of DNA Mixtures

Andreas O. Tillmar, Barbara Dell'Amico, Jenny Welander, Gunilla Holmlund

Small RNA Library Preparation Method for Next-Generation Sequencing Using Chemical Modifications to Prevent Adapter Dimer Formation

Sabrina Shore, Jordana M. Henderson, [ ... ], Richard I. Hogrefe

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