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DNA sequencing

Diagnostic accuracy of nanopore sequencing for the rapid diagnosis of pulmonary tuberculosis: A protocol for a systematic review and meta-analysis

Guocan Yu, Xudong Xu, Yanqin Shen, Bifei Fang

published 06 Jun 2024

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Exploring the potential of Oxford Nanopore Technologies sequencing for Mycobacterium tuberculosis sequencing: An assessment of R10 flowcells and V14 chemistry

Anzaan Dippenaar, Emilyn Costa Conceição, Felicia Wells, Johannes Loubser, Brendon Mann, Miguel De Diego Fuertes, Vincent Rennie, Robin Mark Warren, Annelies Van Rie

published 06 Jun 2024

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Diverse patterns of correspondence between protist metabarcodes and protist metagenome-assembled genomes

Daryna Zavadska, Nicolas Henry, Adrià Auladell, Cédric Berney, Daniel J. Richter

published 06 Jun 2024

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Invasive European green crab (Carcinus maenas) predation in a Washington State estuary revealed with DNA metabarcoding

Mary C. Fisher, Emily W. Grason, Alex Stote, Ryan P. Kelly, Kate Litle, P. Sean McDonald

published 31 May 2024

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NGS method for parallel processing of high quality, damaged or fragmented input material using target enrichment

Anna Lyander, Anna Gellerbring, Moa Hägglund, Keyvan Elhami, Valtteri Wirta

published 29 May 2024

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Protocol for the establishment of a serine integrase-based platform for functional validation of genetic switch controllers in eukaryotic cells

Marco A. de Oliveira, Lilian H. Florentino, Thais T. Sales, Rayane N. Lima, Luciana R. C. Barros, Cintia G. Limia, Mariana S. M. Almeida, Maria L. Robledo, Leila M. G. Barros, Eduardo O. Melo, Daniela M. Bittencourt, Stevens K. Rehen, Martín H. Bonamino, Elibio Rech

published 23 May 2024

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Increased scalability and sequencing quality of an epigenetic age prediction assay

Benjamin Mayne, David Chandler, Christopher Noune, Thomas Espinoza, David Roberts, Chloe Anderson, Oliver Berry

published 14 May 2024

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Advancing responsible genomic analyses of ancient mollusc shells

Raphaël Martin-Roy, Jakob Thyrring, Xavier Mata, Pernille Bangsgaard, Ole Bennike, Gunvor Christiansen, Svend Funder, Anne Birgitte Gotfredsen, Kristian Murphy Gregersen, Camilla Haarby Hansen, Peter Carsten Ilsøe, Lutz Klassen, Inge Kjær Kristensen, Gerd Bindesbøl Ravnholt, Frédéric Marin, Clio Der Sarkissian

published 06 May 2024

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The association of EGFR amplification with aberrant exon 20 insertion report using the cobas EGFR Mutation Test v2

Man-San Zhang, Yi-Chen Yeh, Hsien-Neng Huang, Long-Wei Lin, Yen-Lin Huang, Lei-Chi Wang, Lai-Jin Yao, Tze-Chun Hung, Yu-Fen Tseng, Yi-Hsuan Lee, Wei-Yu Liao, Jin-Yuan Shih, Min-Shu Hsieh

published 30 Apr 2024

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Performance of amplicon and capture based next-generation sequencing approaches for the epidemiological surveillance of Omicron SARS-CoV-2 and other variants of concern

Carlos Daviña-Núñez, Sonia Pérez, Jorge Julio Cabrera-Alvargonzález, Anniris Rincón-Quintero, Ana Treinta-Álvarez, Montse Godoy-Diz, Silvia Suárez-Luque, Benito Regueiro-García

published 29 Apr 2024

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A hepatitis B virus (HBV) sequence variation graph improves alignment and sample-specific consensus sequence construction

Dylan Duchen, Steven J. Clipman, Candelaria Vergara, Chloe L. Thio, David L. Thomas, Priya Duggal, Genevieve L. Wojcik

published 26 Apr 2024

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In silico assessment of 18S rDNA metabarcoding markers for the characterization of nematode communities

Gentile Francesco Ficetola, Alessia Guerrieri, Isabel Cantera, Aurelie Bonin

published 05 Apr 2024

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Comparison of qPCR and metagenomic sequencing methods for quantifying antibiotic resistance genes in wastewater

Gihan Daw Elbait, Mariane Daou, Miral Abuoudah, Ahmed Elmekawy, Shadi W. Hasan, Dean B. Everett, Habiba Alsafar, Andreas Henschel, Ahmed F. Yousef

published 05 Apr 2024

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