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DNA sequencing

Somatic Mutation Profiles of MSI and MSS Colorectal Cancer Identified by Whole Exome Next Generation Sequencing and Bioinformatics Analysis

Bernd Timmermann, Martin Kerick, [ ... ], Michal R. Schweiger

Fixing Formalin: A Method to Recover Genomic-Scale DNA Sequence Data from Formalin-Fixed Museum Specimens Using High-Throughput Sequencing

Sarah M. Hykin, Ke Bi, Jimmy A. McGuire

ANOVA-Like Differential Expression (ALDEx) Analysis for Mixed Population RNA-Seq

Andrew D. Fernandes, Jean M. Macklaim, [ ... ], Gregory B. Gloor

Comparing Apples and Oranges?: Next Generation Sequencing and Its Impact on Microbiome Analysis

Adam G. Clooney, Fiona Fouhy, [ ... ], Marcus J. Claesson

HLA Typing for the Next Generation

Neema P. Mayor, James Robinson, [ ... ], Steven G. E. Marsh

High-molecular weight DNA extraction, clean-up and size selection for long-read sequencing

Ashley Jones, Cynthia Torkel, [ ... ], Benjamin Schwessinger

Plasmid Metagenome Reveals High Levels of Antibiotic Resistance Genes and Mobile Genetic Elements in Activated Sludge

Tong Zhang, Xu-Xiang Zhang, Lin Ye

Next-Generation Sequencing Reveals Significant Bacterial Diversity of Botrytized Wine

Nicholas A. Bokulich, C. M. Lucy Joseph, [ ... ], David A. Mills

Pebble and Rock Band: Heuristic Resolution of Repeats and Scaffolding in the Velvet Short-Read de Novo Assembler

Daniel R. Zerbino, Gayle K. McEwen, Elliott H. Margulies, Ewan Birney

Identification of Optimum Sequencing Depth Especially for De Novo Genome Assembly of Small Genomes Using Next Generation Sequencing Data

Aarti Desai, Veer Singh Marwah, [ ... ], Abhay Jere

Colorectal Cancer and the Human Gut Microbiome: Reproducibility with Whole-Genome Shotgun Sequencing

Emily Vogtmann, Xing Hua, [ ... ], Rashmi Sinha

Species Identification and Profiling of Complex Microbial Communities Using Shotgun Illumina Sequencing of 16S rRNA Amplicon Sequences

Swee Hoe Ong, Vinutha Uppoor Kukkillaya, [ ... ], Niranjan Nagarajan

Direct Metagenomic Detection of Viral Pathogens in Nasal and Fecal Specimens Using an Unbiased High-Throughput Sequencing Approach

Shota Nakamura, Cheng-Song Yang, [ ... ], Takaaki Nakaya

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