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DNA sequencing

MicroRNA expression profile in retina and choroid in oxygen-induced retinopathy model

Michel Desjarlais, Jose Carlos Rivera, Isabelle Lahaie, Gaël Cagnone, Maëlle Wirt, Samy Omri, Sylvain Chemtob

published 12 Jun 2019

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Exploration of antibiotic resistance risks in a veterinary teaching hospital with Oxford Nanopore long read sequencing

Kanishka Indiwari Kamathewatta, Rhys Nathan Bushell, Neil David Young, Mark Anthony Stevenson, Helen Billman-Jacobe, Glenn Francis Browning, Marc Serge Marenda

published 30 May 2019

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Exome chip association study excluded the involvement of rare coding variants with large effect sizes in the etiology of anorectal malformations

Romy van de Putte, Charlotte H. W. Wijers, Heiko Reutter, Sita H. Vermeulen, Carlo L. M. Marcelis, Erwin Brosens, Paul M. A. Broens, Markus Homberg, Michael Ludwig, Ekkehart Jenetzky, Nadine Zwink, Cornelius E. J. Sloots, Annelies de Klein, Alice S. Brooks, Robert M. W. Hofstra, Sophie A. C. Holsink, Loes F. M. van der Zanden, Tessel E. Galesloot, Paul Kwong-Hang Tam, Marloes Steehouwer, Rocio Acuna-Hidalgo, Maartje van de Vorst, Lambertus A. Kiemeney, Maria-Mercè Garcia-Barceló, Ivo de Blaauw, Han G. Brunner, Nel Roeleveld, Iris A. L. M. van Rooij

published 28 May 2019

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Splice donor site sgRNAs enhance CRISPR/Cas9-mediated knockout efficiency

Ignacio García-Tuñón, Verónica Alonso-Pérez, Elena Vuelta, Sandra Pérez- Ramos, María Herrero, Lucía Méndez, Jesús María Hernández-Sánchez, Marta Martín-Izquierdo, Raquel Saldaña, Julián Sevilla, Fermín Sánchez- Guijo, Jesús María Hernández-Rivas, Manuel Sánchez-Martín

published 09 May 2019

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NanoR: A user-friendly R package to analyze and compare nanopore sequencing data

Davide Bolognini, Niccolò Bartalucci, Alessandra Mingrino, Alessandro Maria Vannucchi, Alberto Magi

published 09 May 2019

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Mining and characterization of novel EST-SSR markers of Parrotia subaequalis (Hamamelidaceae) from the first Illumina-based transcriptome datasets

Yunyan Zhang, Mengyuan Zhang, Yimin Hu, Xin Zhuang, Wuqin Xu, Pengfu Li, Zhongsheng Wang

published 06 May 2019

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Three novel compound heterozygous IL12RB1 mutations in Chinese patients with Mendelian susceptibility to mycobacterial disease

Xiaopei Zhou, Weimin Jia, Zhengyi Ni, Ali Wang, Zhenxing Liu, Meiqi Hou, Mi Zhou, Zhongwen Tang, Dazhi Zhang, Lei Li, Tiantian Han, Yang Tan, Geng Luo, Jiarui Wang, Yanling Wu, Xianqin Zhang

published 18 Apr 2019

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A novel CRISPR/Cas9 associated technology for sequence-specific nucleic acid enrichment

Richard C. Stevens, Jennifer L. Steele, William R. Glover, Jorge F. Sanchez-Garcia, Stephen D. Simpson, Devon O’Rourke, Jordan S. Ramsdell, Matthew D. MacManes, W. Kelley Thomas, Anthony P. Shuber

published 18 Apr 2019

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Hepatic DNA methylation and expression profiles under prenatal restricted diet in three generations of female rat fetuses

Joanna Nowacka-Woszuk, Adrian Grzemski, Magdalena Sliwinska, Agata Chmurzynska

published 16 Apr 2019

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Metagenomic 16S rRNA gene sequencing survey of Borrelia species in Irish samples of Ixodes ricinus ticks

John S. Lambert, Michael John Cook, John Eoin Healy, Ross Murtagh, Gordana Avramovic, Sin Hang Lee

published 15 Apr 2019

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An efficient method for noninvasive prenatal diagnosis of fetal trisomy 13, trisomy 18, and trisomy 21

Xiaohan Sun, Jianbo Lu, Xu Ma

published 12 Apr 2019

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Reproducible big data science: A case study in continuous FAIRness

Ravi Madduri, Kyle Chard, Mike D’Arcy, Segun C. Jung, Alexis Rodriguez, Dinanath Sulakhe, Eric Deutsch, Cory Funk, Ben Heavner, Matthew Richards, Paul Shannon, Gustavo Glusman, Nathan Price, Carl Kesselman, Ian Foster

published 11 Apr 2019

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Use of FFPE-derived DNA in next generation sequencing: DNA extraction methods

Samantha J. McDonough, Aditya Bhagwate, Zhifu Sun, Chen Wang, Michael Zschunke, Joshua A. Gorman, Karla J. Kopp, Julie M. Cunningham

published 11 Apr 2019

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