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DNA sequencing

HaTSPiL: A modular pipeline for high-throughput sequencing data analysis

Edoardo Morandi, Matteo Cereda, Danny Incarnato, Caterina Parlato, Giulia Basile, Francesca Anselmi, Andrea Lauria, Lisa Marie Simon, Isabelle Laurence Polignano, Francesca Arruga, Silvia Deaglio, Elisa Tirtei, Franca Fagioli, Salvatore Oliviero

published 15 Oct 2019

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Macrogeographic genetic structure of Lutzomyia longipalpis complex populations using Next Generation Sequencing

Aline Etelvina Casaril, Diego Peres Alonso, Karina Garcia Franco, Marcus Vinicius Niz Alvarez, Suellem Petilim Gomes Barrios, Wagner de Souza Fernandes, Jucelei de Oliveira Moura Infran, Ana Caroline Moura Rodrigues, Paulo Eduardo Martins Ribolla, Alessandra Gutierrez de Oliveira

published 03 Oct 2019

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NGS analysis in Marfan syndrome spectrum: Combination of rare and common genetic variants to improve genotype-phenotype correlation analysis

Davide Gentilini, Antonino Oliveri, Teresa Fazia, Alessandro Pini, Susan Marelli, Luisa Bernardinelli, Anna Maria Di Blasio

published 19 Sep 2019

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Genetic diversity and population structure of four Chinese rabbit breeds

Anyong Ren, Kun Du, Xianbo Jia, Rui Yang, Jie Wang, Shi-Yi Chen, Song-Jia Lai

published 16 Sep 2019

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PCR-free whole exome sequencing: Cost-effective and efficient in detecting rare mutations

Izumi Yamaguchi, Takashi Watanabe, Osamu Ohara, Yoshinori Hasegawa

published 13 Sep 2019

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New Mycobacteroides abscessus subsp. massiliense strains with recombinant hsp65 gene laterally transferred from Mycobacteroides abscessus subsp. abscessus: Potential for misidentification of M. abscessus strains with the hsp65-based method

Byoung-Jun Kim, Ga-Na Kim, Bo-Ram Kim, Tae-Sun Shim, Yoon-Hoh Kook, Bum-Joon Kim

published 13 Sep 2019

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False-negative errors in next-generation sequencing contribute substantially to inconsistency of mutation databases

Young-Ho Kim, Yura Song, Jong-Kwang Kim, Tae-Min Kim, Hye Won Sim, Hyung-Lae Kim, Hyonchol Jang, Young-Woo Kim, Kyeong-Man Hong

published 12 Sep 2019

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Quantitative detection of ALK fusion breakpoints in plasma cell-free DNA from patients with non-small cell lung cancer using PCR-based target sequencing with a tiling primer set and two-step mapping/alignment

Kei Kunimasa, Kikuya Kato, Fumio Imamura, Yoji Kukita

published 12 Sep 2019

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Detection of MYD88 L265P mutation by next-generation deep sequencing in peripheral blood mononuclear cells of Waldenström’s macroglobulinemia and IgM monoclonal gammopathy of undetermined significance

Ayako Nakamura, Chikako Ohwada, Masahiro Takeuchi, Yusuke Takeda, Shokichi Tsukamoto, Naoya Mimura, Oshima-Hasegawa Nagisa, Yasumasa Sugita, Hiroaki Tanaka, Hisashi Wakita, Nobuyuki Aotsuka, Kosei Matsue, Koutaro Yokote, Osamu Ohara, Chiaki Nakaseko, Emiko Sakaida

published 04 Sep 2019

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Effects of road salt on microbial communities: Halophiles as biomarkers of road salt pollution

Wolf T. Pecher, M. Emad Al Madadha, Priya DasSarma, Folasade Ekulona, Eric J. Schott, Kelli Crowe, Bojana Stojkovic Gut, Shiladitya DasSarma

published 04 Sep 2019

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Analysis of the 56-kDa type specific antigen gene of Orientia tsutsugamushi from northern Vietnam

Nguyen Vu Trung, Le Thi Hoi, Do Duy Cuong, Doan The Ha, Tran Mai Hoa, Vu Ngoc Lien, Nguyen Thi Hoa, Le Nguyen Minh Hoa, Dang Thi Huong, Vu Thi Ngoc Bich, H. Rogier van Doorn, Behzad Nadjm, Allen L. Richards

published 30 Aug 2019

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Bayesian hierarchical negative binomial models for multivariable analyses with applications to human microbiome count data

Amanda H. Pendegraft, Boyi Guo, Nengjun Yi

published 22 Aug 2019

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Prospective evaluation of two screening methods for molecular testing of metastatic melanoma: Diagnostic performance of BRAF V600E immunohistochemistry and of a NRAS-BRAF fully automated real-time PCR-based assay

Audrey Vallée, Marie Denis-Musquer, Guillaume Herbreteau, Sandrine Théoleyre, Céline Bossard, Marc G. Denis

published 15 Aug 2019

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