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DNA sequencing

Phylogenetic relationships of Atractylodes lancea, A. chinensis and A. macrocephala, revealed by complete plastome and nuclear gene sequences

Liqiang Wang, Hui Zhang, Xi Wu, Ziyue Wang, Weiwei Fang, Mei Jiang, Haimei Chen, Linfang Huang, Chang Liu

published 28 Jan 2020

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Assessment of the clinical utility of four NGS panels in myeloid malignancies. Suggestions for NGS panel choice or design

Almudena Aguilera-Diaz, Iria Vazquez, Beñat Ariceta, Amagoia Mañú, Zuriñe Blasco-Iturri, Sara Palomino-Echeverría, María José Larrayoz, Ramón García-Sanz, María Isabel Prieto-Conde, María del Carmen Chillón, Ana Alfonso-Pierola, Felipe Prosper, Marta Fernandez-Mercado, María José Calasanz

published 24 Jan 2020

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Comparing bioinformatic pipelines for microbial 16S rRNA amplicon sequencing

Andrei Prodan, Valentina Tremaroli, Harald Brolin, Aeilko H. Zwinderman, Max Nieuwdorp, Evgeni Levin

published 16 Jan 2020

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Quantitative PCR provides a simple and accessible method for quantitative microbiota profiling

Ching Jian, Panu Luukkonen, Hannele Yki-Järvinen, Anne Salonen, Katri Korpela

published 15 Jan 2020

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Diversity of Mycobacteriaceae from aquatic environment at the São Paulo Zoological Park Foundation in Brazil

Camila Lopes Romagnoli, Katia Cristina Machado Pellegrino, Natalia Maria Silva, Urze Adomaitis Brianesi, Sylvia Cardoso Leão, Michelle Christiane da Silva Rabello, Cristina Viana-Niero

published 14 Jan 2020

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Sequencing artifacts derived from a library preparation method using enzymatic fragmentation

Norio Tanaka, Akihisa Takahara, Taichi Hagio, Rika Nishiko, Junko Kanayama, Osamu Gotoh, Seiichi Mori

published 03 Jan 2020

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Effect of endometriosis on the fecal bacteriota composition of mice during the acute phase of lesion formation

Josefine Hantschel, Severin Weis, Karl-Herbert Schäfer, Michael D. Menger, Matthias Kohl, Markus Egert, Matthias W. Laschke

published 30 Dec 2019

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Clinical feasibility of NGS liquid biopsy analysis in NSCLC patients

Eirini Papadopoulou, Nikolaos Tsoulos, Katerina Tsantikidi, Vasiliki Metaxa-Mariatou, Pinelopi Eleftheria Stamou, Athina Kladi-Skandali, Evgenia Kapeni, Georgios Tsaousis, George Pentheroudakis, Dimitrios Petrakis, Dimitra Ioanna Lampropoulou, Gerasimos Aravantinos, Ioannis Varthalitis, George Kesisis, Ioannis Boukovinas, Pavlos Papakotoulas, Nikolaos Katirtzoglou, Elias Athanasiadis, Flora Stavridi, Christos Christodoulou, Anna Koumarianou, Yeşim Eralp, George Nasioulas

published 20 Dec 2019

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DNA metabarcoding-based diet survey for the Eurasian otter (Lutra lutra): Development of a Eurasian otter-specific blocking oligonucleotide for 12S rRNA gene sequencing for vertebrates

Priyanka Kumari, Ke Dong, Kyung Yeon Eo, Woo-Shin Lee, Junpei Kimura, Naomichi Yamamoto

published 12 Dec 2019

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Use of an automated pyrosequencing technique for confirmation of sickle cell disease

Camila Cruz de Martino, Cecilia Salete Alencar, Paula Loureiro, Anna Barbara de Freitas Carneiro-Proietti, Claudia de Alvarenga Máximo, Rosimere Afonso Mota, Daniela Oliveira Werneck Rodrigues, Nelson Gaburo Junior, Shannon Kelly, Ester Cerdeira Sabino, for the International Component of the NHLBI Recipient Epidemiology and Donor Evaluation Study (REDS-III)

published 12 Dec 2019

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Backward compatibility of whole genome sequencing data with MLVA typing using a new MLVAtype shiny application for Vibrio cholerae

Jérôme Ambroise, Léonid M. Irenge, Jean-François Durant, Bertrand Bearzatto, Godfrey Bwire, O. Colin Stine, Jean-Luc Gala

published 11 Dec 2019

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SparkGA2: Production-quality memory-efficient Apache Spark based genome analysis framework

Hamid Mushtaq, Nauman Ahmed, Zaid Al-Ars

published 05 Dec 2019

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Autosomal-dominant hypotrichosis with woolly hair: Novel gene locus on chromosome 4q35.1-q35.2

Annika E. Schlaweck, Rachid Tazi-Ahnini, F. Buket Ü. Basmanav, Javed Mohungoo, Sandra M. Pasternack-Ziach, Manuel Mattheisen, Ana-Maria Oprisoreanu, Aytaj Humbatova, Sabrina Wolf, Andrew Messenger, Regina C. Betz

published 02 Dec 2019

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