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DNA sequencing

Distinct community structures of soil nematodes from three ecologically different sites revealed by high-throughput amplicon sequencing of four 18S ribosomal RNA gene regions

Harutaro Kenmotsu, Masahiro Ishikawa, Tomokazu Nitta, Yuu Hirose, Toshihiko Eki

published 15 Apr 2021

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Faecalibacterium prausnitzii increases following fecal microbiota transplantation in recurrent Clostridioides difficile infection

Olle Björkqvist, Ignacio Rangel, Lena Serrander, Cecilia Magnusson, Jonas Halfvarson, Torbjörn Norén, Malin Bergman-Jungeström

published 09 Apr 2021

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CaBagE: A Cas9-based Background Elimination strategy for targeted, long-read DNA sequencing

Amelia D. Wallace, Thomas A. Sasani, Jordan Swanier, Brooke L. Gates, Jeff Greenland, Brent S. Pedersen, Katherine E. Varley, Aaron R. Quinlan

published 08 Apr 2021

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BH₄-deficient hyperphenylalaninemia in Russia

Polina Gundorova, Irina A. Kuznetcova, Galina V. Baydakova, Anna A. Stepanova, Yulia S. Itkis, Victoria S. Kakaulina, Irina P. Alferova, Lidya V. Lyazina, Lilya P. Andreeva, Ilya Kanivets, Ekaterina Y. Zakharova, Sergey I. Kutsev, Aleksander V. Polyakov

published 06 Apr 2021

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The diagnostic accuracy of digital PCR, ARMS and NGS for detecting KRAS mutation in cell-free DNA of patients with colorectal cancer: A systematic review and meta-analysis

Peng Ye, Peiling Cai, Jing Xie, Yuanyuan Wei

published 26 Mar 2021

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High mutation burden in the checkpoint and micro-RNA processing genes in myelodysplastic syndrome

Ivan Sergeevich Moiseev, Nikolay Yurevich Tcvetkov, Ildar Munerovich Barkhatov, Maria Vladimirovna Barabanshikova, Dmitrii Sergeevich Bug, Natalya Vitalievna Petuhova, Artem Valerievich Tishkov, Evgenyi Alexandrovich Bakin, Ekaterina Andreevna Izmailova, Alena Igorevna Shakirova, Alexandr Dmitrievich Kulagin, Elena Vladislavovna Morozova

published 17 Mar 2021

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De novo identification and targeted sequencing of SSRs efficiently fingerprints Sorghum bicolor sub-population identity

John P. Baggett, Richard L. Tillett, Elizabeth A. Cooper, Melinda K. Yerka

published 08 Mar 2021

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Flow Assisted Mutation Enrichment (FAME): A highly efficacious and efficient method to enrich Double Knockouts (DKO) after gene editing

Michael Hansen, Xiaopin Cai, Sara Bowen, David A. Largaespada, Ming V. Li

published 04 Mar 2021

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Clinical benefit for clinical sequencing using cancer panel testing

Sadaaki Nishimura, Atsushi Sugimoto, Shuhei Kushiyama, Shingo Togano, Kenji Kuroda, Yurie Yamamoto, Makoto Yamauchi, Toshiyuki Sumi, Hiroyasu Kaneda, Tomoya Kawaguchi, Minoru Kato, Mizuki Tagami, Naoto Oebisu, Manabu Hoshi, Kenjiro Kimura, Shoji Kubo, Kazuya Muguruma, Tsutomu Takashima, Masaichi Ohira, Masakazu Yashiro

published 26 Feb 2021

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From e-voucher to genomic data: Preserving archive specimens as demonstrated with medically important mosquitoes (Diptera: Culicidae) and kissing bugs (Hemiptera: Reduviidae)

Silvia Andrade Justi, John Soghigian, David B. Pecor, Laura Caicedo-Quiroga, Wiriya Rutvisuttinunt, Tao Li, Lori Stevens, Patricia L. Dorn, Brian Wiegmann, Yvonne-Marie Linton

published 25 Feb 2021

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The porcine corneal surface bacterial microbiome: A distinctive niche within the ocular surface

Marina L. Leis, Gabriela M. Madruga, Matheus O. Costa

published 19 Feb 2021

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Development of a program for in silico optimized selection of oligonucleotide-based molecular barcodes

In Seok Yang, Sang Won Bae, BeumJin Park, Sangwoo Kim

published 18 Feb 2021

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Cell-free DNA in spent culture medium effectively reflects the chromosomal status of embryos following culturing beyond implantation compared to trophectoderm biopsy

Akihiro Shitara, Kazumasa Takahashi, Mayumi Goto, Harunori Takahashi, Takuya Iwasawa, Yohei Onodera, Kenichi Makino, Hiroshi Miura, Hiromitsu Shirasawa, Wataru Sato, Yukiyo Kumazawa, Yukihiro Terada

published 11 Feb 2021

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